The utility of single nucleotide polymorphisms in inferences of population history

RT Brumfield, P Beerli, DA Nickerson… - Trends in Ecology & …, 2003 - cell.com
Single nucleotide polymorphisms (SNPs) represent the most widespread type of sequence
variation in genomes, yet they have only emerged recently as valuable genetic markers for …

Denaturing high‐performance liquid chromatography: A review

W Xiao, PJ Oefner - Human mutation, 2001 - Wiley Online Library
Denaturing high‐performance liquid chromatography (DHPLC) compares two or more
chromosomes as a mixture of denatured and reannealed PCR amplicons, revealing the …

Molecular marker systems in insects: current trends and future avenues

SK Behura - Molecular ecology, 2006 - Wiley Online Library
Insects comprise the largest species composition in the entire animal kingdom and possess
a vast undiscovered genetic diversity and gene pool that can be better explored using …

GEOGRAPHIC VARIATION IN DIAPAUSE INCIDENCE, LIFE‐HISTORY TRAITS, AND CLIMATIC ADAPTATION IN DROSOPHILA MELANOGASTER

PS Schmidt, L Matzkin, M Ippolito, WF Eanes - Evolution, 2005 - Wiley Online Library
In Drosophila melanogaster, exposure of females to low temperature and shortened
photoperiod can induce the expression of reproductive quiescence or diapause. Diapause …

Pyrobayes: an improved base caller for SNP discovery in pyrosequences

AR Quinlan, DA Stewart, MP Strömberg, GT Marth - Nature methods, 2008 - nature.com
Previously reported applications of the 454 Life Sciences pyrosequencing technology have
relied on deep sequence coverage for accurate polymorphism discovery because of …

Single‐nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genome

CR Primmer, T Borge, J Lindell, GP Saetre - Molecular Ecology, 2002 - Wiley Online Library
As a case study for single‐nucleotide polymorphism (SNP) identification in species for which
little or no sequence information is available, we investigated several approaches to …

Rhythm Defects Caused by Newly Engineered Null Mutations in Drosophila's cryptochrome Gene

E Dolezelova, D Dolezel, JC Hall - Genetics, 2007 - academic.oup.com
Much of the knowledge about cryptochrome function in Drosophila stems from analyzing the
cryb mutant. Several features of this variant's light responsiveness imply either that CRYb …

An amino acid polymorphism in the couch potato gene forms the basis for climatic adaptation in Drosophila melanogaster

PS Schmidt, CT Zhu, J Das, M Batavia… - Proceedings of the …, 2008 - National Acad Sciences
Diapause is the classic adaptation to seasonality in arthropods, and its expression can result
in extreme lifespan extension as well as enhanced resistance to environmental challenges …

Genetic mapping with SNP markers in Drosophila

J Berger, T Suzuki, KA Senti, J Stubbs, G Schaffner… - Nature …, 2001 - nature.com
Map-based positional cloning of Drosophila melanogaster genes is hampered by both the
time-consuming, error-prone nature of traditional methods for genetic mapping and the …

Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing

PC Bundock, FG Eliott, G Ablett… - Plant biotechnology …, 2009 - Wiley Online Library
Discovering single nucleotide polymorphisms (SNPs) in specific genes in a heterozygous
polyploid plant species, such as sugarcane, is challenging because of the presence of a …