Classification of intrinsically disordered regions and proteins

R Van Der Lee, M Buljan, B Lang, RJ Weatheritt… - Chemical …, 2014 - ACS Publications
Over the past decade, we have observed a massive increase in the amount of information
describing protein sequences from a variety of organisms. 1, 2 While this may reflect the …

Introducing protein intrinsic disorder

J Habchi, P Tompa, S Longhi, VN Uversky - Chemical reviews, 2014 - ACS Publications
Proteins are the major component of the living cell. They play crucial roles in the
maintenance of life, and their dysfunctions are known to cause different pathologies. One of …

MobiDB: intrinsically disordered proteins in 2021

D Piovesan, M Necci, N Escobedo… - Nucleic acids …, 2021 - academic.oup.com
The MobiDB database (URL: https://mobidb. org/) provides predictions and annotations for
intrinsically disordered proteins. Here, we report recent developments implemented in …

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins

D Piovesan, F Tabaro, L Paladin, M Necci… - Nucleic acids …, 2018 - academic.oup.com
The MobiDB (URL: mobidb. bio. unipd. it) database of protein disorder and mobility
annotations has been significantly updated and upgraded since its last major renewal in …

Dynamics of proteins in solution

M Grimaldo, F Roosen-Runge, F Zhang… - Quarterly Reviews of …, 2019 - cambridge.org
The dynamics of proteins in solution includes a variety of processes, such as backbone and
side-chain fluctuations, interdomain motions, as well as global rotational and translational …

Third generation antibody discovery methods: in silico rational design

P Sormanni, FA Aprile, M Vendruscolo - Chemical Society Reviews, 2018 - pubs.rsc.org
Owing to their outstanding performances in molecular recognition, antibodies are
extensively used in research and applications in molecular biology, biotechnology and …

DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins

D Raimondi, I Tanyalcin, J Ferté, A Gazzo… - Nucleic acids …, 2017 - academic.oup.com
High-throughput sequencing methods are generating enormous amounts of genomic data,
giving unprecedented insights into human genetic variation and its relation to disease. An …

The hydrophobic temperature dependence of amino acids directly calculated from protein structures

E Van Dijk, A Hoogeveen, S Abeln - PLoS computational biology, 2015 - journals.plos.org
The hydrophobic effect is the main driving force in protein folding. One can estimate the
relative strength of this hydrophobic effect for each amino acid by mining a large set of …

[HTML][HTML] Sequence-based prediction of fuzzy protein interactions

M Miskei, A Horvath, M Vendruscolo… - Journal of molecular …, 2020 - Elsevier
It is becoming increasingly recognised that disordered proteins may be fuzzy, in that they
can exhibit a wide variety of binding modes. In addition to the well-known process of folding …

Identification of a drug targeting an intrinsically disordered protein involved in pancreatic adenocarcinoma

JL Neira, J Bintz, M Arruebo, B Rizzuti, T Bonacci… - Scientific reports, 2017 - nature.com
Intrinsically disordered proteins (IDPs) are prevalent in eukaryotes, performing signaling and
regulatory functions. Often associated with human diseases, they constitute drug …