PMAT: an efficient plant mitogenome assembly toolkit using low-coverage HiFi sequencing data

C Bi, F Shen, F Han, Y Qu, J Hou, K Xu, L Xu… - Horticulture …, 2024 - academic.oup.com
Complete mitochondrial genomes (mitogenomes) of plants are valuable resources for
nucleocytoplasmic interactions, plant evolution, and plant cytoplasmic male sterile line …

Remarkable mitochondrial genome heterogeneity in Meniocus linifolius (Brassicaceae)

J Liu, JY Hu, DZ Li - Plant Cell Reports, 2024 - Springer
Key message Detailed analyses of 16 genomes identified a remarkable acceleration of
mutation rate, hence mitochondrial sequence and structural heterogeneity, in Meniocus …

Assembly and comparative analysis of the complete mitochondrial genome of Salix wilsonii using PacBio HiFi sequencing

F Han, Y Qu, Y Chen, L Xu, C Bi - Frontiers in Plant Science, 2022 - frontiersin.org
Salix L.(willows) is one of the most taxonomically complex genera of flowering plants,
including shrubs, tall trees, bushes, and prostrate plants. Despite the high species diversity …

Complete mitochondrial genome of Agrostis stolonifera: insights into structure, Codon usage, repeats, and RNA editing

J Li, Y Chen, Y Liu, C Wang, L Li, Y Chao - BMC genomics, 2023 - Springer
Background Plants possess mitochondrial genomes that are large and complex compared
to animals. Despite their size, plant mitochondrial genomes do not contain significantly more …

Factors contributing to mitogenome size variation and a recurrent intracellular DNA transfer in Melastoma

S Zhou, X Zhi, R Yu, Y Liu, R Zhou - BMC genomics, 2023 - Springer
Background Mitogenome sizes of seed plants vary substantially even among closely related
species, which are often related to horizontal or intracellular DNA transfer (HDT or IDT) …

Multiple configurations of the plastid and mitochondrial genomes of Caragana spinosa

Q Zhou, Y Ni, J Li, L Huang, H Li, H Chen, C Liu - Planta, 2023 - Springer
Abstract Main Conclusion In this study, we assembled the complete plastome and
mitogenome of Caragana spinosa and explored the multiple configurations of the organelle …

[HTML][HTML] Genetic Evaluation of Water Use Efficiency and Nutrient Use Efficiency in Populus deltoides Bartr. ex Marsh. Seedlings in China

C Gao, C Liu, C Chen, N Liu, F Liu, X Su, Q Huang - Plants, 2024 - mdpi.com
Populus deltoides Bartr. ex Marsh. represents a valuable genetic resource for fast-growing
plantations in temperate regions. It holds significant cultivation and breeding potential in …

Assembly and characterization of the complete mitochondrial genome of Ventilago leiocarpa

S Guo, Z Li, C Li, Y Liu, X Liang, Y Qin - Plant Cell Reports, 2024 - Springer
Key message We reported the mitochondrial genome of Ventilago leiocarpa for the first time.
Two and one sites lead to the generation of stop and stat codon through editing were …

Comparative analysis of the mitochondrial genomes of four Dendrobium species (Orchidaceae) reveals heterogeneity in structure, synteny, intercellular gene transfer …

L Wang, X Liu, Y Wang, X Ming, J Qi… - Frontiers in Plant …, 2024 - frontiersin.org
The genus Dendrobium, part of the Orchidaceae family, encompasses species of significant
medicinal, nutritional, and economic value. However, many Dendrobium species are …

Assembly and comparative analysis of the initial complete mitochondrial genome of Primulina hunanensis (Gesneriaceae): a cave-dwelling endangered plant

L Chen, X Dong, H Huang, H Xu, PC Rono, X Cai… - BMC genomics, 2024 - Springer
Background Primulina hunanensis, a troglobitic plant within the Primulina genus of
Gesneriaceae family, exhibits robust resilience to arid conditions and holds great …