Evolutionary genomics of high fecundity
B Eldon - Annual Review of Genetics, 2020 - annualreviews.org
Natural highly fecund populations abound. These range from viruses to gadids. Many highly
fecund populations are economically important. Highly fecund populations provide an …
fecund populations are economically important. Highly fecund populations provide an …
Multiple Merger Genealogies in Outbreaks of Mycobacterium tuberculosis
The Kingman coalescent and its developments are often considered among the most
important advances in population genetics of the last decades. Demographic inference …
important advances in population genetics of the last decades. Demographic inference …
The impact of genetic diversity statistics on model selection between coalescents
F Freund, A Siri-Jégousse - Computational Statistics & Data Analysis, 2021 - Elsevier
Modeling genetic diversity needs an underlying genealogy model. To choose a fitting model
based on genetic data, one can perform model selection between classes of genealogical …
based on genetic data, one can perform model selection between classes of genealogical …
Cannings models, population size changes and multiple-merger coalescents
F Freund - Journal of mathematical biology, 2020 - Springer
Multiple-merger coalescents, eg\varLambda Λ-n-coalescents, have been proposed as
models of the genealogy of n sampled individuals for a range of populations whose …
models of the genealogy of n sampled individuals for a range of populations whose …
On Λ-Fleming–Viot processes with general frequency-dependent selection
AG Casanova, C Smadi - Journal of Applied Probability, 2020 - cambridge.org
We construct a multitype constant-size population model allowing for general selective
interactions as well as extreme reproductive events. Our multidimensional model aims for …
interactions as well as extreme reproductive events. Our multidimensional model aims for …
[HTML][HTML] Early underdetected dissemination across countries followed by extensive local transmission propelled the 2022 mpox epidemic
Abstract The World Health Organization declared mpox a public health emergency of
international concern in July 2022. To investigate global mpox transmission and population …
international concern in July 2022. To investigate global mpox transmission and population …
Early underdetected dissemination followed by extensive local transmission propelled the 2022 mpox epidemic and limited impact of vaccination
Abstract The World Health Organization (WHO) declared mpox a public health emergency of
international concern in July 2022. It is still unclear to what extent international travel …
international concern in July 2022. It is still unclear to what extent international travel …
Inference of multiple mergers while dating a pathogen phylogeny
The vast majority of pathogen phylogenetic studies do not consider the possibility of multiple
merger events being present, where a single node of the tree leads to more than two …
merger events being present, where a single node of the tree leads to more than two …
Multiple merger coalescent inference of effective population size
J Zhang, JA Palacios - arXiv preprint arXiv:2407.14976, 2024 - arxiv.org
Variation in a sample of molecular sequence data informs about the past evolutionary
history of the sample's population. Traditionally, Bayesian modeling coupled with the …
history of the sample's population. Traditionally, Bayesian modeling coupled with the …
The TMRCA of general genealogies in populations of variable size
AH Wemces, L Peñaloza, M Steinruecken… - bioRxiv, 2024 - biorxiv.org
We study the time to the most recent common ancestor of a sample of finite size in a wide
class of genealogical models for populations with variable size. This is made possible by …
class of genealogical models for populations with variable size. This is made possible by …