Cellular and epigenetic perspective of protein stability and its implications in the biological system

N Manav, BP Jit, B Kataria, A Sharma - Epigenomics, 2024 - Taylor & Francis
Protein stability is a fundamental prerequisite in both experimental and therapeutic
applications. Current advancements in high throughput experimental techniques and …

Using Chou's pseudo amino acid composition to predict protein quaternary structure: a sequence-segmented PseAAC approach

SW Zhang, W Chen, F Yang, Q Pan - Amino Acids, 2008 - Springer
In the protein universe, many proteins are composed of two or more polypeptide chains,
generally referred to as subunits, which associate through noncovalent interactions and …

Protein sequences classification by means of feature extraction with substitution matrices

R Saidi, M Maddouri, E Mephu Nguifo - BMC bioinformatics, 2010 - Springer
Background This paper deals with the preprocessing of protein sequences for supervised
classification. Motif extraction is one way to address that task. It has been largely used to …

Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition

L Chen, KY Feng, YD Cai, KC Chou, HP Li - BMC bioinformatics, 2010 - Springer
Background Metabolic pathway is a highly regulated network consisting of many metabolic
reactions involving substrates, enzymes, and products, where substrates can be transformed …

ECS: an automatic enzyme classifier based on functional domain composition

L Lu, Z Qian, YD Cai, Y Li - Computational biology and chemistry, 2007 - Elsevier
Classification for enzymes is a prerequisite for understanding their function. Here, an
automatic enzyme identifier based on support vector machine (SVM) with feature vectors …

[PDF][PDF] Prediction of protein function based on machine learning methods: an overview

K Kadam, S Sawant, U Kulkarni-Kale… - genomics III: methods …, 2014 - researchgate.net
Proteins represent the most important class of biomolecules in living organisms. They carry
out majority of the cellular processes and act as structural constituents, catalysis agents …

A novel computational method to predict transcription factor DNA binding preference

Z Qian, YD Cai, Y Li - Biochemical and biophysical research …, 2006 - Elsevier
Transcription factor binds to sequence specific sites in regulatory region to control nearby
gene's expression. It is termed as the major regulator of transcription. However, identifying …

The combination approach of SVM and ECOC for powerful identification and classification of transcription factor

G Zheng, Z Qian, Q Yang, C Wei, L Xie, Y Zhu, Y Li - BMC bioinformatics, 2008 - Springer
Abstract Background Transcription factors (TFs) are core functional proteins which play
important roles in gene expression control, and they are key factors for gene regulation …

食品中蛋白质力学性质的研究进展.

仪淑敏, 吴琪, 李学鹏, 谢晶, 王轰… - Journal of Food …, 2021 - search.ebscohost.com
蛋白质对食品的色, 香, 味及组织结构等具有重要意义. 近年来, 越来越多的研究发现蛋白质的
力学性质有助于改善食品的营养, 风味, 口感, 质地. 本文综述了食品中蛋白质的力学性质及其 …

Protein sequence classification based on n-gram and k-nearest neighbor algorithm

J Dongardive, S Abraham - … Intelligence in Data Mining—Volume 2 …, 2016 - Springer
The paper proposes classification of protein sequences using K-Nearest Neighbor (KNN)
algorithm. Motif extraction method N-gram is used to encode biological sequences into …