[HTML][HTML] Current techniques to study beneficial plant-microbe interactions

E Gamalero, E Bona, BR Glick - Microorganisms, 2022 - mdpi.com
Many different experimental approaches have been applied to elaborate and study the
beneficial interactions between soil bacteria and plants. Some of these methods focus on …

[HTML][HTML] Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity

JC Hyun, JM Monk, BO Palsson - BMC genomics, 2022 - Springer
Background With the exponential growth of publicly available genome sequences,
pangenome analyses have provided increasingly complete pictures of genetic diversity for …

Identification of potential novel therapeutic drug target against Elizabethkingia anophelis by integrative pan and subtractive genomic analysis: An in silico approach

P Sarker, A Mitro, H Hoque, MN Hasan… - Computers in Biology …, 2023 - Elsevier
Elizabethkingia anophelis is a human pathogen responsible for severe nosocomial
infections in neonates and immunocompromised patients. The significantly higher mortality …

[HTML][HTML] The genomic basis of the Streptococcus thermophilus health-promoting properties

E Roux, A Nicolas, F Valence, G Siekaniec, V Chuat… - BMC genomics, 2022 - Springer
Background Streptococcus thermophilus is a Gram-positive bacterium widely used as starter
in the dairy industry as well as in many traditional fermented products. In addition to its …

[HTML][HTML] To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131

E Tantoso, B Eisenhaber, M Kirsch, V Shitov, Z Zhao… - Bmc Biology, 2022 - Springer
Background Escherichia coli (E. coli) has been one of the most studied model organisms in
the history of life sciences. Initially thought just to be commensal bacteria, E. coli has shown …

[HTML][HTML] Specialized Metabolism of Gordonia Genus: An Integrated Survey on Chemodiversity Combined with a Comparative Genomics-Based Analysis

J Sánchez-Suárez, L Díaz, E Coy-Barrera, L Villamil - BioTech, 2022 - mdpi.com
Members of the phylum Actinomycetota (formerly Actinobacteria) have historically been the
most prolific providers of small bioactive molecules. Although the genus Streptomyces is the …

[HTML][HTML] Integration of text mining and biological network analysis: Identification of essential genes in sulfate-reducing bacteria

P Saxena, S Rauniyar, P Thakur, RN Singh… - Frontiers in …, 2023 - frontiersin.org
The growth and survival of an organism in a particular environment is highly depends on the
certain indispensable genes, termed as essential genes. Sulfate-reducing bacteria (SRB) …

[HTML][HTML] Comparative Genomics of Pseudomonas aeruginosa Strains Isolated from Different Ecological Niches

J Gómez-Martínez, RC Rocha-Gracia, E Bello-López… - Antibiotics, 2023 - mdpi.com
The Pseudomonas aeruginosa genome can change to adapt to different ecological niches.
We compared four genomes from a Mexican hospital and 59 genomes from GenBank from …

[HTML][HTML] Navigating and expanding the roadmap of natural product genome mining tools

F Biermann, SL Wenski… - Beilstein Journal of …, 2022 - beilstein-journals.org
Natural products are structurally highly diverse and exhibit a wide array of biological
activities. As a result, they serve as an important source of new drug leads. Traditionally …

Characterization and Identification of Probiotic Features in Lacticaseibacillus Paracasei Using a Comparative Genomic Analysis Approach

A Torres-Miranda, F Melis-Arcos, D Garrido - Probiotics and Antimicrobial …, 2022 - Springer
Lacticaseibacillus paracasei species are widely used for their health-promoting properties in
food and agricultural applications. These bacteria have been isolated from various habitats …