Polyploidy and interspecific hybridization: partners for adaptation, speciation and evolution in plants

K Alix, PR Gérard, T Schwarzacher… - Annals of …, 2017 - academic.oup.com
Background Polyploidy or whole-genome duplication is now recognized as being present in
almost all lineages of higher plants, with multiple rounds of polyploidy occurring in most …

Patterns and processes of diploidization in land plants

Z Li, MTW McKibben, GS Finch… - Annual review of …, 2021 - annualreviews.org
Most land plants are now known to be ancient polyploids that have rediploidized.
Diploidization involves many changes in genome organization that ultimately restore …

Origin and evolution of the octoploid strawberry genome

PP Edger, TJ Poorten, R VanBuren, MA Hardigan… - Nature …, 2019 - nature.com
Cultivated strawberry emerged from the hybridization of two wild octoploid species, both
descendants from the merger of four diploid progenitor species into a single nucleus more …

Using genomic data to infer historic population dynamics of nonmodel organisms

AC Beichman, E Huerta-Sanchez… - Annual Review of …, 2018 - annualreviews.org
Genome sequence data are now being routinely obtained from many nonmodel organisms.
These data contain a wealth of information about the demographic history of the populations …

The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation

JF Wendel, D Lisch, G Hu, AS Mason - Current opinion in genetics & …, 2018 - Elsevier
We consider the rapidly advancing discipline of plant evolutionary genomics, with a focus on
the evolution of polyploid genomes. In many lineages, polyploidy is followed by 'biased …

Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff

R VanBuren, C Man Wai, X Wang, J Pardo… - Nature …, 2020 - nature.com
Teff (Eragrostis tef) is a cornerstone of food security in the Horn of Africa, where it is prized
for stress resilience, grain nutrition, and market value. Here, we report a chromosome-scale …

Concerted genomic and epigenomic changes accompany stabilization of Arabidopsis allopolyploids

X Jiang, Q Song, W Ye, ZJ Chen - Nature Ecology & Evolution, 2021 - nature.com
During evolution successful allopolyploids must overcome 'genome shock'between
hybridizing species but the underlying process remains elusive. Here, we report concerted …

Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective

SK Deb, PP Edger, JC Pires, MR McKain - New Phytologist, 2023 - Wiley Online Library
Allopolyploids result from hybridization between different evolutionary lineages coupled with
genome doubling. Homoeologous chromosomes (chromosomes with common shared …

Gene duplicability of core genes is highly consistent across all angiosperms

Z Li, J Defoort, S Tasdighian, S Maere… - The Plant …, 2016 - academic.oup.com
Gene duplication is an important mechanism for adding to genomic novelty. Hence, which
genes undergo duplication and are preserved following duplication is an important question …

Gradual evolution of allopolyploidy in Arabidopsis suecica

R Burns, T Mandáková, J Gunis… - Nature Ecology & …, 2021 - nature.com
Most diploid organisms have polyploid ancestors. The evolutionary process of
polyploidization is poorly understood but has frequently been conjectured to involve some …