Structure and function of type II restriction endonucleases

A Pingoud, A Jeltsch - Nucleic acids research, 2001 - academic.oup.com
More than 3000 type II restriction endonucleases have been discovered. They recognize
short, usually palindromic, sequences of 4–8 bp and, in the presence of Mg2+, cleave the …

Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility

BS Chevalier, BL Stoddard - Nucleic acids research, 2001 - academic.oup.com
Homing endonucleases confer mobility to their host intervening sequence, either an intron
or intein, by catalyzing a highly specific double-strand break in a cognate allele lacking the …

Crystal structure of an avian influenza polymerase PAN reveals an endonuclease active site

P Yuan, M Bartlam, Z Lou, S Chen, J Zhou, X He, Z Lv… - Nature, 2009 - nature.com
The heterotrimeric influenza virus polymerase, containing the PA, PB1 and PB2 proteins,
catalyses viral RNA replication and transcription in the nucleus of infected cells. PB1 holds …

Behavior of restriction–modification systems as selfish mobile elements and their impact on genome evolution

I Kobayashi - Nucleic acids research, 2001 - academic.oup.com
Restriction–modification (RM) systems are composed of genes that encode a restriction
enzyme and a modification methylase. RM systems sometimes behave as discrete units of …

Type II restriction endonucleases—a historical perspective and more

A Pingoud, GG Wilson, W Wende - Nucleic acids research, 2014 - academic.oup.com
This article continues the series of Surveys and Summaries on restriction endonucleases
(REases) begun this year in Nucleic Acids Research. Here we discuss 'Type II'REases, the …

DNA hydrolysis promoted by di-and multi-nuclear metal complexes

C Liu, M Wang, T Zhang, H Sun - Coordination Chemistry Reviews, 2004 - Elsevier
DNA hydrolysis mediated by di-and multi-nuclear metal complexes is of increasing
importance in biotechnology and medicine. Many systems for enzyme-mediated nucleic acid …

Origins of allostery and evolvability in proteins: a case study

AS Raman, KI White, R Ranganathan - Cell, 2016 - cell.com
Proteins display the capacity for adaptation to new functions, a property critical for
evolvability. But what structural principles underlie the capacity for adaptation? Here, we …

SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories

L Aravind, KS Makarova, EV Koonin - Nucleic acids research, 2000 - academic.oup.com
Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. A detailed
computer analysis of the structural and evolutionary relationships of HJRs and related …

Sequence, structure and functional diversity of PD-(D/E) XK phosphodiesterase superfamily

K Steczkiewicz, A Muszewska, L Knizewski… - Nucleic acids …, 2012 - academic.oup.com
Proteins belonging to PD-(D/E) XK phosphodiesterases constitute a functionally diverse
superfamily with representatives involved in replication, restriction, DNA repair and tRNA …

Structure of a TonEBP–DNA complex reveals DNA encircled by a transcription factor

JC Stroud, C Lopez-Rodriguez, A Rao… - Nature structural …, 2002 - nature.com
Tonicity-responsive enhancer binding protein (TonEBP), also known as NFAT5, is a unique
member of the NFAT family of transcription factors that regulates gene expression induced …