Gaussian process regression for materials and molecules

VL Deringer, AP Bartók, N Bernstein… - Chemical …, 2021 - ACS Publications
We provide an introduction to Gaussian process regression (GPR) machine-learning
methods in computational materials science and chemistry. The focus of the present review …

Machine learning for alloys

GLW Hart, T Mueller, C Toher, S Curtarolo - Nature Reviews Materials, 2021 - nature.com
Alloy modelling has a history of machine-learning-like approaches, preceding the tide of
data-science-inspired work. The dawn of computational databases has made the integration …

Choosing the right molecular machine learning potential

M Pinheiro, F Ge, N Ferré, PO Dral, M Barbatti - Chemical Science, 2021 - pubs.rsc.org
Quantum-chemistry simulations based on potential energy surfaces of molecules provide
invaluable insight into the physicochemical processes at the atomistic level and yield such …

Autonomous discovery in the chemical sciences part I: Progress

CW Coley, NS Eyke, KF Jensen - … Chemie International Edition, 2020 - Wiley Online Library
This two‐part Review examines how automation has contributed to different aspects of
discovery in the chemical sciences. In this first part, we describe a classification for …

pySiRC”: Machine Learning Combined with Molecular Fingerprints to Predict the Reaction Rate Constant of the Radical-Based Oxidation Processes of Aqueous …

FO Sanches-Neto, JR Dias-Silva… - Environmental …, 2021 - ACS Publications
We developed a web application structured in a machine learning and molecular fingerprint
algorithm for the automatic calculation of the reaction rate constant of the oxidative …

Representations of molecules and materials for interpolation of quantum-mechanical simulations via machine learning

MF Langer, A Goeßmann, M Rupp - npj Computational Materials, 2022 - nature.com
Computational study of molecules and materials from first principles is a cornerstone of
physics, chemistry, and materials science, but limited by the cost of accurate and precise …

Is distance matrix enough for geometric deep learning?

Z Li, X Wang, Y Huang… - Advances in Neural …, 2024 - proceedings.neurips.cc
Abstract Graph Neural Networks (GNNs) are often used for tasks involving the 3D geometry
of a given graph, such as molecular dynamics simulation. While incorporating Euclidean …

Efficient amino acid conformer search with Bayesian optimization

L Fang, E Makkonen, M Todorovic… - Journal of chemical …, 2021 - ACS Publications
Finding low-energy molecular conformers is challenging due to the high dimensionality of
the search space and the computational cost of accurate quantum chemical methods for …

Fast Near Ab Initio Potential Energy Surfaces Using Machine Learning

F Lu, L Cheng, RJ DiRisio, JM Finney… - The Journal of …, 2022 - ACS Publications
A machine-learning based approach for evaluating potential energies for quantum
mechanical studies of properties of the ground and excited vibrational states of small …

Bayesian machine learning approach to the quantification of uncertainties on ab initio potential energy surfaces

S Venturi, RL Jaffe, M Panesi - The Journal of Physical Chemistry …, 2020 - ACS Publications
This work introduces a novel methodology for the quantification of uncertainties associated
with potential energy surfaces (PESs) computed from first-principles quantum mechanical …