Computational methods for gene regulatory networks reconstruction and analysis: a review

FM Delgado, F Gómez-Vela - Artificial intelligence in medicine, 2019 - Elsevier
In the recent years, the vast amount of genetic information generated by new-generation
approaches, have led to the need of new data handling methods. The integrative analysis of …

[HTML][HTML] What makes a good prediction? Feature importance and beginning to open the black box of machine learning in genetics

AM Musolf, ER Holzinger, JD Malley, JE Bailey-Wilson - Human Genetics, 2022 - Springer
Genetic data have become increasingly complex within the past decade, leading
researchers to pursue increasingly complex questions, such as those involving epistatic …

Peptides and combination of peptides for use in immunotherapy against small cell lung cancer and other cancers

M Andrea, T Weinschenk, V Goldfinger… - US Patent …, 2019 - Google Patents
The present invention relates to peptides, proteins, nucleic acids and cells for use in
immunotherapeutic methods. In particular, the present invention relates to the immuno …

Peptides and combination of peptides for use in immunotherapy against small cell lung cancer and other cancers

A Mahr, T Weinschenk, V Goldfinger, O Schoor… - 2018 - Google Patents
ZRKFYGHZFMAOKI-QMGMOQQFSA-N tgfbeta Chemical compound C ([C@ H](NC (=
O)[C@ H](C (C) C) NC (= O) CNC (= O)[C@ H](CCC (O)= O) NC (= O)[C@ H](CCCNC (N) …

[HTML][HTML] The impact of metabolic endotoxaemia on the browning process in human adipocytes

F Omran, AM Murphy, AZ Younis, I Kyrou, J Vrbikova… - BMC medicine, 2023 - Springer
Background Dysfunctional adipose tissue (AT) is known to contribute to the pathophysiology
of metabolic disease, including type 2 diabetes mellitus (T2DM). This dysfunction may occur …

[HTML][HTML] An artificial neural network integrated pipeline for biomarker discovery using Alzheimer's disease as a case study

D Zafeiris, S Rutella, GR Ball - Computational and Structural Biotechnology …, 2018 - Elsevier
The field of machine learning has allowed researchers to generate and analyse vast
amounts of data using a wide variety of methodologies. Artificial Neural Networks (ANN) are …

Lurbinectedin inactivates the Ewing sarcoma oncoprotein EWS-FLI1 by redistributing it within the nucleus

ML Harlow, N Maloney, J Roland, MJ Guillen Navarro… - Cancer research, 2016 - AACR
There is a great need to develop novel approaches to target oncogenic transcription factors
with small molecules. Ewing sarcoma is emblematic of this need, as it depends on the …

A guide to gene regulatory network inference for obtaining predictive solutions: Underlying assumptions and fundamental biological and data constraints

S Barbosa, B Niebel, S Wolf, K Mauch, R Takors - Biosystems, 2018 - Elsevier
The study of biological systems at a system level has become a reality due to the increasing
powerful computational approaches able to handle increasingly larger datasets. Uncovering …

[HTML][HTML] MTSS1 and SCAMP1 cooperate to prevent invasion in breast cancer

J Vadakekolathu, SIK Al-Juboori, C Johnson… - Cell death & …, 2018 - nature.com
Cell–cell adhesions constitute the structural “glue” that retains cells together and contributes
to tissue organisation and physiological function. The integrity of these structures is …

The neonatal Fc receptor in cancer FcRn in cancer

D Cadena Castaneda, G Brachet, C Goupille… - Cancer …, 2020 - Wiley Online Library
ABSTRACT Since the neonatal IgG Fc receptor (FcRn) was discovered, it was found to be
involved in immunoglobulin recycling and biodistribution, immune complexes routing …