Virtual screening with AutoDock: theory and practice
S Cosconati, S Forli, AL Perryman… - Expert opinion on …, 2010 - Taylor & Francis
Importance of the field: Virtual screening is a computer-based technique for identifying
promising compounds to bind to a target molecule of known structure. Given the rapidly …
promising compounds to bind to a target molecule of known structure. Given the rapidly …
Virtual screening in drug discovery-a computational perspective
AS Reddy, SP Pati, PP Kumar… - Current Protein and …, 2007 - ingentaconnect.com
Virtual screening emerged as an important tool in our quest to access novel drug like
compounds. There are a wide range of comparable and contrasting methodological …
compounds. There are a wide range of comparable and contrasting methodological …
Molecular docking algorithms
R Dias, J de Azevedo, F Walter - Current drug targets, 2008 - ingentaconnect.com
By means of virtual screening of small molecules databases it is possible to identify new
potential inhibitors against a target of interest. Molecular docking is a computer simulation …
potential inhibitors against a target of interest. Molecular docking is a computer simulation …
Huanglongbing pandemic: current challenges and emerging management strategies
Huanglongbing (HLB, aka citrus greening), one of the most devastating diseases of citrus,
has wreaked havoc on the global citrus industry in recent decades. The culprit behind such …
has wreaked havoc on the global citrus industry in recent decades. The culprit behind such …
An improved relaxed complex scheme for receptor flexibility in computer-aided drug design
The interactions among associating (macro) molecules are dynamic, which adds to the
complexity of molecular recognition. While ligand flexibility is well accounted for in …
complexity of molecular recognition. While ligand flexibility is well accounted for in …
Structure-based virtual screening of chemical libraries for drug discovery
S Ghosh, A Nie, J An, Z Huang - Current opinion in chemical biology, 2006 - Elsevier
One of the main goals in drug discovery is to identify new chemical entities that have a high
likelihood of binding to the target protein to elicit the desired biological response. To this …
likelihood of binding to the target protein to elicit the desired biological response. To this …
AutoDock and AutoDockTools for protein-ligand docking: beta-site amyloid precursor protein cleaving enzyme 1 (BACE1) as a case study
Computational docking and scoring techniques have revolutionized structural bioinformatics
by providing unprecedented insights on key aspects of ligand-receptor interaction. Docking …
by providing unprecedented insights on key aspects of ligand-receptor interaction. Docking …
Therapeutic targeting of Myc
EV Prochownik, PK Vogt - Genes & cancer, 2010 - journals.sagepub.com
Protein–protein interactions between members of the Myc transcription factor network are
potential targets of small molecule inhibitors and stabilizers. Diverse screening strategies …
potential targets of small molecule inhibitors and stabilizers. Diverse screening strategies …
Critical assessment of the automated AutoDock as a new docking tool for virtual screening
H Park, J Lee, S Lee - Proteins: Structure, Function, and …, 2006 - Wiley Online Library
A major problem in virtual screening concerns the accuracy of the binding free energy
between a target protein and a putative ligand. Here we report an example supporting the …
between a target protein and a putative ligand. Here we report an example supporting the …
Docking screens: right for the right reasons?
Whereas docking screens have emerged as the most practical way to use protein structure
for ligand discovery, an inconsistent track record raises questions about how well docking …
for ligand discovery, an inconsistent track record raises questions about how well docking …