Innovations to culturing the uncultured microbial majority

WH Lewis, G Tahon, P Geesink, DZ Sousa… - Nature Reviews …, 2021 - nature.com
Despite the surge of microbial genome data, experimental testing is important to confirm
inferences about the cell biology, ecological roles and evolution of microorganisms. As the …

Remediation techniques for elimination of heavy metal pollutants from soil: A review

U Azhar, H Ahmad, H Shafqat, M Babar… - Environmental …, 2022 - Elsevier
Contaminated soil containing toxic metals and metalloids is found everywhere globally. As a
consequence of adsorption and precipitation reactions, metals are comparatively immobile …

[HTML][HTML] Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation

S Liu, CD Moon, N Zheng, S Huws, S Zhao, J Wang - Microbiome, 2022 - Springer
Although there is now an extensive understanding of the diversity of microbial life on earth
through culture-independent metagenomic DNA sequence analyses, the isolation and …

[HTML][HTML] Challenges of unculturable bacteria: environmental perspectives

A Bodor, N Bounedjoum, GE Vincze… - … Science and Bio …, 2020 - Springer
Environmental biotechnology offers several promising techniques for the rehabilitation of
polluted environments. The modern industrialized world presents novel challenges to the …

[HTML][HTML] The Ecology of Acidobacteria: Moving beyond Genes and Genomes

AM Kielak, CC Barreto, GA Kowalchuk… - Frontiers in …, 2016 - frontiersin.org
The phylum Acidobacteria is one of the most widespread and abundant on the planet, yet
remarkably our knowledge of the role of these diverse organisms in the functioning of …

High-throughput cultivation and identification of bacteria from the plant root microbiota

J Zhang, YX Liu, X Guo, Y Qin, R Garrido-Oter… - Nature …, 2021 - nature.com
Cultivating native bacteria from roots of plants grown in a given environment is essential for
dissecting the functions of the root microbiota for plant growth and health with strain-specific …

Critical evaluation of biodegradation studies on synthetic plastics through a systematic literature review

T Matjašič, T Simčič, N Medvešček, O Bajt… - Science of the Total …, 2021 - Elsevier
Increasing amounts of plastic waste in the environment and their fragmentation into smaller
particles known as microplastics (particles,< 5 mm) have raised global concerns due to their …

The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota

JC Lagier, P Hugon, S Khelaifia… - Clinical microbiology …, 2015 - Am Soc Microbiol
Bacterial culture was the first method used to describe the human microbiota, but this
method is considered outdated by many researchers. Metagenomics studies have since …

The invisible life inside plants: Deciphering the riddles of endophytic bacterial diversity

J Papik, M Folkmanova, M Polivkova-Majorova… - Biotechnology …, 2020 - Elsevier
Endophytic bacteria often promote plant growth and protect their host plant against
pathogens, herbivores, and abiotic stresses including drought, increased salinity or …

Present and future of culturing bacteria

J Overmann, B Abt, J Sikorski - Annual review of microbiology, 2017 - annualreviews.org
The cultivation of bacteria is highly biased toward a few phylogenetic groups. Many of the
currently underexplored bacterial lineages likely have novel biosynthetic pathways and …