Diverse functions of restriction-modification systems in addition to cellular defense

K Vasu, V Nagaraja - Microbiology and molecular biology reviews, 2013 - Am Soc Microbiol
Restriction-modification (RM) systems are ubiquitous and are often considered primitive
immune systems in bacteria. Their diversity and prevalence across the prokaryotic kingdom …

Type II restriction endonucleases—a historical perspective and more

A Pingoud, GG Wilson, W Wende - Nucleic acids research, 2014 - academic.oup.com
This article continues the series of Surveys and Summaries on restriction endonucleases
(REases) begun this year in Nucleic Acids Research. Here we discuss 'Type II'REases, the …

The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli

R Sapranauskas, G Gasiunas, C Fremaux… - Nucleic acids …, 2011 - academic.oup.com
The CRISPR/Cas adaptive immune system provides resistance against phages and
plasmids in Archaea and Bacteria. CRISPR loci integrate short DNA sequences from …

Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin

A Bolotin, B Quinquis, A Sorokin… - Microbiology, 2005 - microbiologyresearch.org
Numerous prokaryote genomes contain structures known as clustered regularly interspaced
short palindromic repeats (CRISPRs), composed of 25–50 bp repeats separated by unique …

Phage-encoded anti-CRISPR defenses

SY Stanley, KL Maxwell - Annual review of genetics, 2018 - annualreviews.org
The battle for survival between bacteria and bacteriophages (phages) is an arms race where
bacteria develop defenses to protect themselves from phages and phages evolve …

HNH proteins are a widespread component of phage DNA packaging machines

S Kala, N Cumby, PD Sadowski… - Proceedings of the …, 2014 - National Acad Sciences
The genome packaging reactions of tailed bacteriophages and herpes viruses require the
activity of a terminase enzyme, which is comprised of large and small subunits. Phage …

Structure, function and mechanism of exocyclic DNA methyltransferases

S Bheemanaik, YVR Reddy, DN Rao - Biochemical Journal, 2006 - portlandpress.com
DNA MTases (methyltransferases) catalyse the transfer of methyl groups to DNA from
AdoMet (S-adenosyl-l-methionine) producing AdoHcy (S-adenosyl-l-homocysteine) and …

Natural and engineered nicking endonucleases—from cleavage mechanism to engineering of strand-specificity

SH Chan, BL Stoddard, S Xu - Nucleic acids research, 2011 - academic.oup.com
Restriction endonucleases (REases) are highly specific DNA scissors that have facilitated
the development of modern molecular biology. Intensive studies of double strand (ds) …

Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses

J Orlowski, JM Bujnicki - Nucleic acids research, 2008 - academic.oup.com
For a very long time, Type II restriction enzymes (REases) have been a paradigm of
ORFans: proteins with no detectable similarity to each other and to any other protein in the …

Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R. BbvCI

DF Heiter, KD Lunnen, GG Wilson - Journal of molecular biology, 2005 - Elsevier
The restriction enzyme R. BbvCI cleaves duplex DNA within a seven base-pair asymmetric
recognition sequence, thus: CCTCAGC/GCTGAGG→ CC^ TCAGC/GC^ TGAGG. We show …