[HTML][HTML] Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization

F Hu, AA Chen, H Horng, V Bashyam, C Davatzikos… - NeuroImage, 2023 - Elsevier
Magnetic resonance imaging and computed tomography from multiple batches (eg sites,
scanners, datasets, etc.) are increasingly used alongside complex downstream analyses to …

Functional connectomics in depression: insights into therapies

Y Chai, YI Sheline, DJ Oathes, NL Balderston… - Trends in Cognitive …, 2023 - cell.com
Depression is a common mental disorder characterized by heterogeneous cognitive and
behavioral symptoms. The emerging research paradigm of functional connectomics has …

Braingb: a benchmark for brain network analysis with graph neural networks

H Cui, W Dai, Y Zhu, X Kan, AAC Gu… - IEEE transactions on …, 2022 - ieeexplore.ieee.org
Mapping the connectome of the human brain using structural or functional connectivity has
become one of the most pervasive paradigms for neuroimaging analysis. Recently, Graph …

Mitigating site effects in covariance for machine learning in neuroimaging data

AA Chen, JC Beer, NJ Tustison, PA Cook… - Human brain …, 2022 - Wiley Online Library
To acquire larger samples for answering complex questions in neuroscience, researchers
have increasingly turned to multi‐site neuroimaging studies. However, these studies are …

A multi-site, multi-disorder resting-state magnetic resonance image database

SC Tanaka, A Yamashita, N Yahata, T Itahashi, G Lisi… - Scientific data, 2021 - nature.com
Abstract Machine learning classifiers for psychiatric disorders using resting-state functional
magnetic resonance imaging (rs-fMRI) have recently attracted attention as a method for …

Precision functional MRI mapping reveals distinct connectivity patterns for depression associated with traumatic brain injury

SH Siddiqi, S Kandala, CD Hacker… - Science translational …, 2023 - science.org
Depression associated with traumatic brain injury (TBI) is believed to be clinically distinct
from primary major depressive disorder (MDD) and may be less responsive to conventional …

Variability and standardization of quantitative imaging: monoparametric to multiparametric quantification, radiomics, and artificial intelligence

A Hagiwara, S Fujita, Y Ohno, S Aoki - Investigative radiology, 2020 - journals.lww.com
Radiological images have been assessed qualitatively in most clinical settings by the expert
eyes of radiologists and other clinicians. On the other hand, quantification of radiological …

Closing the life-cycle of normative modeling using federated hierarchical Bayesian regression

SM Kia, H Huijsdens, S Rutherford, A de Boer, R Dinga… - Plos one, 2022 - journals.plos.org
Clinical neuroimaging data availability has grown substantially in the last decade, providing
the potential for studying heterogeneity in clinical cohorts on a previously unprecedented …

Challenges of implementing computer-aided diagnostic models for neuroimages in a clinical setting

MJ Leming, EE Bron, R Bruffaerts, Y Ou… - NPJ Digital …, 2023 - nature.com
Advances in artificial intelligence have cultivated a strong interest in developing and
validating the clinical utilities of computer-aided diagnostic models. Machine learning for …

Comparison of traveling‐subject and ComBat harmonization methods for assessing structural brain characteristics

N Maikusa, Y Zhu, A Uematsu… - Human brain …, 2021 - Wiley Online Library
Multisite magnetic resonance imaging (MRI) is increasingly used in clinical research and
development. Measurement biases—caused by site differences in scanner/image …