[HTML][HTML] Metagenomics-enabled microbial surveillance
KKK Ko, KR Chng, N Nagarajan - Nature Microbiology, 2022 - nature.com
Lessons learnt from the COVID-19 pandemic include increased awareness of the potential
for zoonoses and emerging infectious diseases that can adversely affect human health …
for zoonoses and emerging infectious diseases that can adversely affect human health …
[HTML][HTML] Innovations in genomic antimicrobial resistance surveillance
NE Wheeler, V Price, E Cunningham-Oakes… - The Lancet …, 2023 - thelancet.com
Whole-genome sequencing of antimicrobial-resistant pathogens is increasingly being used
for antimicrobial resistance (AMR) surveillance, particularly in high-income countries …
for antimicrobial resistance (AMR) surveillance, particularly in high-income countries …
Microbiological diagnostic performance of metagenomic next-generation sequencing when applied to clinical practice
Q Miao, Y Ma, Q Wang, J Pan, Y Zhang… - Clinical Infectious …, 2018 - academic.oup.com
Background Metagenomic next-generation sequencing (mNGS) was suggested to
potentially replace traditional microbiological methodology because of its …
potentially replace traditional microbiological methodology because of its …
[HTML][HTML] 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales
In March 2020, following the annual International Committee on Taxonomy of Viruses (ICTV)
ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and …
ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and …
[HTML][HTML] 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales
JH Kuhn, S Adkins, BR Agwanda, R Al Kubrusli… - Archives of …, 2021 - Springer
In March 2021, following the annual International Committee on Taxonomy of Viruses (ICTV)
ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and …
ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and …
Identification of Novel Viruses in Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis Ticks
R Tokarz, S Sameroff, T Tagliafierro, K Jain… - Msphere, 2018 - Am Soc Microbiol
Ticks carry a wide range of known human and animal pathogens and are postulated to carry
others with the potential to cause disease. Here we report a discovery effort wherein …
others with the potential to cause disease. Here we report a discovery effort wherein …
[HTML][HTML] Microbiome analysis of Ixodes scapularis ticks from New York and Connecticut
R Tokarz, T Tagliafierro, S Sameroff, DM Cucura… - Ticks and Tick-Borne …, 2019 - Elsevier
We employed high throughput sequencing to survey the microbiomes of Ixodes scapularis
collected in New York and Connecticut. We examined 197 individual I. scapularis adults and …
collected in New York and Connecticut. We examined 197 individual I. scapularis adults and …
[HTML][HTML] Characterizing and evaluating the zoonotic potential of novel viruses discovered in vampire bats
The contemporary surge in metagenomic sequencing has transformed knowledge of viral
diversity in wildlife. However, evaluating which newly discovered viruses pose sufficient risk …
diversity in wildlife. However, evaluating which newly discovered viruses pose sufficient risk …
Virome analysis of tick-borne viruses in Heilongjiang Province, China
Ticks are implicated in the transmission of various human and livestock pathogens
worldwide. This study aimed to understand the geographical distribution of tick species …
worldwide. This study aimed to understand the geographical distribution of tick species …
Discovery and surveillance of tick-borne pathogens
R Tokarz, WI Lipkin - Journal of Medical Entomology, 2021 - academic.oup.com
Within the past 30 yr molecular assays have largely supplanted classical methods for
detection of tick-borne agents. Enhancements provided by molecular assays, including …
detection of tick-borne agents. Enhancements provided by molecular assays, including …