[HTML][HTML] Metagenomics-enabled microbial surveillance

KKK Ko, KR Chng, N Nagarajan - Nature Microbiology, 2022 - nature.com
Lessons learnt from the COVID-19 pandemic include increased awareness of the potential
for zoonoses and emerging infectious diseases that can adversely affect human health …

[HTML][HTML] Innovations in genomic antimicrobial resistance surveillance

NE Wheeler, V Price, E Cunningham-Oakes… - The Lancet …, 2023 - thelancet.com
Whole-genome sequencing of antimicrobial-resistant pathogens is increasingly being used
for antimicrobial resistance (AMR) surveillance, particularly in high-income countries …

Microbiological diagnostic performance of metagenomic next-generation sequencing when applied to clinical practice

Q Miao, Y Ma, Q Wang, J Pan, Y Zhang… - Clinical Infectious …, 2018 - academic.oup.com
Background Metagenomic next-generation sequencing (mNGS) was suggested to
potentially replace traditional microbiological methodology because of its …

[HTML][HTML] 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

JH Kuhn, S Adkins, D Alioto, SV Alkhovsky… - Archives of …, 2020 - Springer
In March 2020, following the annual International Committee on Taxonomy of Viruses (ICTV)
ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and …

[HTML][HTML] 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

JH Kuhn, S Adkins, BR Agwanda, R Al Kubrusli… - Archives of …, 2021 - Springer
In March 2021, following the annual International Committee on Taxonomy of Viruses (ICTV)
ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and …

Identification of Novel Viruses in Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis Ticks

R Tokarz, S Sameroff, T Tagliafierro, K Jain… - Msphere, 2018 - Am Soc Microbiol
Ticks carry a wide range of known human and animal pathogens and are postulated to carry
others with the potential to cause disease. Here we report a discovery effort wherein …

[HTML][HTML] Microbiome analysis of Ixodes scapularis ticks from New York and Connecticut

R Tokarz, T Tagliafierro, S Sameroff, DM Cucura… - Ticks and Tick-Borne …, 2019 - Elsevier
We employed high throughput sequencing to survey the microbiomes of Ixodes scapularis
collected in New York and Connecticut. We examined 197 individual I. scapularis adults and …

[HTML][HTML] Characterizing and evaluating the zoonotic potential of novel viruses discovered in vampire bats

LM Bergner, N Mollentze, RJ Orton, C Tello, A Broos… - Viruses, 2021 - mdpi.com
The contemporary surge in metagenomic sequencing has transformed knowledge of viral
diversity in wildlife. However, evaluating which newly discovered viruses pose sufficient risk …

Virome analysis of tick-borne viruses in Heilongjiang Province, China

F Meng, M Ding, Z Tan, Z Zhao, L Xu, J Wu… - Ticks and tick-borne …, 2019 - Elsevier
Ticks are implicated in the transmission of various human and livestock pathogens
worldwide. This study aimed to understand the geographical distribution of tick species …

Discovery and surveillance of tick-borne pathogens

R Tokarz, WI Lipkin - Journal of Medical Entomology, 2021 - academic.oup.com
Within the past 30 yr molecular assays have largely supplanted classical methods for
detection of tick-borne agents. Enhancements provided by molecular assays, including …