Extracellular Matrix Proteomics: The mdx-4cv Mouse Diaphragm as a Surrogate for Studying Myofibrosis in Dystrophinopathy

P Dowling, S Gargan, M Zweyer, D Swandulla… - Biomolecules, 2023 - mdpi.com
The progressive degeneration of the skeletal musculature in Duchenne muscular dystrophy
is accompanied by reactive myofibrosis, fat substitution, and chronic inflammation. Fibrotic …

Proteomics of the Heart

OA Karpov, A Stotland, K Raedschelders… - Physiological …, 2024 - journals.physiology.org
Mass spectrometry-based proteomics is a sophisticated identification tool specializing in
portraying protein dynamics at a molecular level. Proteomics provides biologists with a …

Suspension trapping (S-Trap) is compatible with typical protein extraction buffers and detergents for bottom-up proteomics

D Elinger, A Gabashvili, Y Levin - Journal of proteome research, 2019 - ACS Publications
The analysis of cells and tissue by bottom-up proteomics starts with lysis, followed by in-
solution digestion. Lysis buffers commonly used include detergents and other reagents for …

Evaluation and refinement of sample preparation methods for extracellular matrix proteome coverage

MC McCabe, LR Schmitt, RC Hill… - Molecular & Cellular …, 2021 - ASBMB
The extracellular matrix is a key component of tissues, yet it is underrepresented in
proteomic datasets. Identification and evaluation of proteins in the extracellular matrix (ECM) …

Proteome-wide and matrisome-specific alterations during human pancreas development and maturation

Z Li, DM Tremmel, F Ma, Q Yu, M Ma… - Nature …, 2021 - nature.com
The extracellular matrix (ECM) is unique to each tissue and capable of guiding cell
differentiation, migration, morphology, and function. The ECM proteome of different …

MS1 ion current‐based quantitative proteomics: A promising solution for reliable analysis of large biological cohorts

X Wang, S Shen, SS Rasam, J Qu - Mass spectrometry reviews, 2019 - Wiley Online Library
The rapidly‐advancing field of pharmaceutical and clinical research calls for systematic,
molecular‐level characterization of complex biological systems. To this end, quantitative …

Advances in the proteomic profiling of the matrisome and adhesome

L Krasny, PH Huang - Expert Review of Proteomics, 2021 - Taylor & Francis
Introduction The matrisome and adhesome comprise proteins that are found within or are
associated with the extracellular matrix (ECM) and adhesion complexes, respectively …

In depth quantification of extracellular matrix proteins from human pancreas

F Ma, DM Tremmel, Z Li, CB Lietz… - Journal of proteome …, 2019 - ACS Publications
Extracellular matrix (ECM) is an important component of the pancreatic microenvironment
which regulates β cell proliferation, differentiation, and insulin secretion. Protocols have …

Analysis of pancreatic extracellular matrix protein post-translational modifications via electrostatic repulsion-hydrophilic interaction chromatography coupled with mass …

DN Tabang, Y Cui, DM Tremmel, M Ford, Z Li… - Molecular omics, 2021 - pubs.rsc.org
The pancreas is a vital organ with digestive and endocrine roles, and diseases of the
pancreas affect millions of people yearly. A better understanding of the pancreas proteome …

[HTML][HTML] First 3D-Structural Data of Full-Length Guanylyl Cyclase 1 in Rod-Outer-Segment Preparations of Bovine Retina by Cross-Linking/Mass Spectrometry

A Rehkamp, D Tänzler, C Tüting, PL Kastritis… - Journal of Molecular …, 2021 - Elsevier
The rod-outer-segment guanylyl cyclase 1 (ROS-GC1) is a key transmembrane protein for
retinal phototransduction. Mutations of ROS-GC1 correlate with different retinal diseases that …