Twenty years of plant genome sequencing: achievements and challenges

Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …

The current developments in medicinal plant genomics enabled the diversification of secondary metabolites' biosynthesis

MM Alami, Z Ouyang, Y Zhang, S Shu, G Yang… - International journal of …, 2022 - mdpi.com
Medicinal plants produce important substrates for their adaptation and defenses against
environmental factors and, at the same time, are used for traditional medicine and industrial …

Analysis of the Coptis chinensis genome reveals the diversification of protoberberine-type alkaloids

Y Liu, B Wang, S Shu, Z Li, C Song, D Liu, Y Niu… - Nature …, 2021 - nature.com
Abstract Chinese goldthread (Coptis chinensis Franch.), a member of the Ranunculales,
represents an important early-diverging eudicot lineage with diverse medicinal applications …

The Latest Studies on Lotus (Nelumbo nucifera)-an Emerging Horticultural Model Plant

Z Lin, C Zhang, D Cao, RN Damaris… - International journal of …, 2019 - mdpi.com
Lotus (Nelumbo nucifera) is a perennial aquatic basal eudicot belonging to a small family
Nelumbonaceace, which contains only one genus with two species. It is an important …

[PDF][PDF] Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants

T Shi, RS Rahmani, PF Gugger, M Wang… - Molecular Biology …, 2020 - academic.oup.com
For most sequenced flowering plants, multiple whole-genome duplications (WGDs) are
found. Duplicated genes following WGD often have different fates that can quickly disappear …

The slow-evolving Acorus tatarinowii genome sheds light on ancestral monocot evolution

T Shi, C Huneau, Y Zhang, Y Li, J Chen, J Salse… - Nature Plants, 2022 - nature.com
Monocots are one of the most diverse groups of flowering plants, and tracing the evolution of
their ancestral genome into modern species is essential for understanding their evolutionary …

Research advances in and prospects of ornamental plant genomics

T Zheng, P Li, L Li, Q Zhang - Horticulture Research, 2021 - academic.oup.com
The term 'ornamental plant'refers to all plants with ornamental value, which generally have
beautiful flowers or special plant architectures. China is rich in ornamental plant resources …

Comparative analyses of American and Asian lotus genomes reveal insights into petal color, carpel thermogenesis and domestication

P Zheng, H Sun, J Liu, J Lin, X Zhang, Y Qin… - The Plant …, 2022 - Wiley Online Library
Nelumbo lutea (American lotus), which differs from Nelumbo nucifera (Asian lotus)
morphologically, is one of the two remaining species in the basal eudicot family …

Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages

T Zhang, W Huang, L Zhang, DZ Li, J Qi… - Nature Communications, 2024 - nature.com
Poaceae members shared a whole-genome duplication called rho. However, little is known
about the evolutionary pattern of the rho-derived duplicates among Poaceae lineages and …

Re-examination of two diatom reference genomes using long-read sequencing

GV Filloramo, BA Curtis, E Blanche, JM Archibald - BMC genomics, 2021 - Springer
Abstract Background The marine diatoms Thalassiosira pseudonana and Phaeodactylum
tricornutum are valuable model organisms for exploring the evolution, diversity and ecology …