Virus taxonomy in the age of metagenomics

P Simmonds, MJ Adams, M Benkő, M Breitbart… - Nature Reviews …, 2017 - nature.com
The number and diversity of viral sequences that are identified in metagenomic data far
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …

Microviruses: A World Beyond phiX174

PC Kirchberger, H Ochman - Annual Review of Virology, 2023 - annualreviews.org
Two decades of metagenomic analyses have revealed that in many environments, small (∼
5 kb), single-stranded DNA phages of the family Microviridae dominate the virome. Although …

VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences

K Kieft, Z Zhou, K Anantharaman - Microbiome, 2020 - Springer
Background Viruses are central to microbial community structure in all environments. The
ability to generate large metagenomic assemblies of mixed microbial and viral sequences …

Viruses under the Antarctic Ice Shelf are active and potentially involved in global nutrient cycles

J Lopez-Simon, M Vila-Nistal, A Rosenova… - Nature …, 2023 - nature.com
Viruses play an important role in the marine ecosystem. However, our comprehension of
viruses inhabiting the dark ocean, and in particular, under the Antarctic Ice Shelves, remains …

Microbial ecology of Antarctic aquatic systems

R Cavicchioli - Nature Reviews Microbiology, 2015 - nature.com
The Earth's biosphere is dominated by cold environments, and the cold biosphere is
dominated by microorganisms. Microorganisms in cold Southern Ocean waters are …

Challenges of studying the human virome–relevant emerging technologies

MK Mirzaei, J Xue, R Costa, J Ru, S Schulz… - Trends in …, 2021 - cell.com
In this review we provide an overview of current challenges and advances in bacteriophage
research within the growing field of viromics. In particular, we discuss, from a human virome …

Using signature genes as tools to assess environmental viral ecology and diversity

EM Adriaenssens, DA Cowan - Applied and environmental …, 2014 - Am Soc Microbiol
Viruses (including bacteriophages) are the most abundant biological entities on the planet.
As such, they are thought to have a major impact on all aspects of microbial community …

Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy

P Aiewsakun, EM Adriaenssens… - Journal of General …, 2018 - microbiologyresearch.org
Genome Relationship Applied to Virus Taxonomy (GRAViTy) is a genetics-based tool that
computes sequence relatedness between viruses. Composite generalized Jaccard (CGJ) …

[HTML][HTML] Differential removal of human pathogenic viruses from sewage by conventional and ozone treatments

H Wang, P Sikora, C Rutgersson, M Lindh… - International Journal of …, 2018 - Elsevier
Sewage contains a mixed ecosystem of diverse sets of microorganisms, including human
pathogenic viruses. Little is known about how conventional as well as advanced treatments …

Organizing the global diversity of microviruses

PC Kirchberger, ZA Martinez, H Ochman - Mbio, 2022 - Am Soc Microbiol
Microviruses encompass an astonishing array of small, single-stranded DNA phages that,
due to the surge in metagenomic surveys, are now known to be prevalent in most …