Virus taxonomy in the age of metagenomics
The number and diversity of viral sequences that are identified in metagenomic data far
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
Microviruses: A World Beyond phiX174
PC Kirchberger, H Ochman - Annual Review of Virology, 2023 - annualreviews.org
Two decades of metagenomic analyses have revealed that in many environments, small (∼
5 kb), single-stranded DNA phages of the family Microviridae dominate the virome. Although …
5 kb), single-stranded DNA phages of the family Microviridae dominate the virome. Although …
VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences
K Kieft, Z Zhou, K Anantharaman - Microbiome, 2020 - Springer
Background Viruses are central to microbial community structure in all environments. The
ability to generate large metagenomic assemblies of mixed microbial and viral sequences …
ability to generate large metagenomic assemblies of mixed microbial and viral sequences …
Viruses under the Antarctic Ice Shelf are active and potentially involved in global nutrient cycles
J Lopez-Simon, M Vila-Nistal, A Rosenova… - Nature …, 2023 - nature.com
Viruses play an important role in the marine ecosystem. However, our comprehension of
viruses inhabiting the dark ocean, and in particular, under the Antarctic Ice Shelves, remains …
viruses inhabiting the dark ocean, and in particular, under the Antarctic Ice Shelves, remains …
Microbial ecology of Antarctic aquatic systems
R Cavicchioli - Nature Reviews Microbiology, 2015 - nature.com
The Earth's biosphere is dominated by cold environments, and the cold biosphere is
dominated by microorganisms. Microorganisms in cold Southern Ocean waters are …
dominated by microorganisms. Microorganisms in cold Southern Ocean waters are …
Challenges of studying the human virome–relevant emerging technologies
In this review we provide an overview of current challenges and advances in bacteriophage
research within the growing field of viromics. In particular, we discuss, from a human virome …
research within the growing field of viromics. In particular, we discuss, from a human virome …
Using signature genes as tools to assess environmental viral ecology and diversity
EM Adriaenssens, DA Cowan - Applied and environmental …, 2014 - Am Soc Microbiol
Viruses (including bacteriophages) are the most abundant biological entities on the planet.
As such, they are thought to have a major impact on all aspects of microbial community …
As such, they are thought to have a major impact on all aspects of microbial community …
Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy
P Aiewsakun, EM Adriaenssens… - Journal of General …, 2018 - microbiologyresearch.org
Genome Relationship Applied to Virus Taxonomy (GRAViTy) is a genetics-based tool that
computes sequence relatedness between viruses. Composite generalized Jaccard (CGJ) …
computes sequence relatedness between viruses. Composite generalized Jaccard (CGJ) …
[HTML][HTML] Differential removal of human pathogenic viruses from sewage by conventional and ozone treatments
Sewage contains a mixed ecosystem of diverse sets of microorganisms, including human
pathogenic viruses. Little is known about how conventional as well as advanced treatments …
pathogenic viruses. Little is known about how conventional as well as advanced treatments …
Organizing the global diversity of microviruses
Microviruses encompass an astonishing array of small, single-stranded DNA phages that,
due to the surge in metagenomic surveys, are now known to be prevalent in most …
due to the surge in metagenomic surveys, are now known to be prevalent in most …