Ecological modelling approaches for predicting emergent properties in microbial communities

NI van den Berg, D Machado, S Santos… - Nature ecology & …, 2022 - nature.com
Recent studies have brought forward the critical role of emergent properties in shaping
microbial communities and the ecosystems of which they are a part. Emergent properties …

Multi-replicated enrichment communities as a model system in microbial ecology

S Estrela, Á Sánchez, M Rebolleda-Gómez - Frontiers in Microbiology, 2021 - frontiersin.org
Recent advances in robotics and affordable genomic sequencing technologies have made it
possible to establish and quantitatively track the assembly of enrichment communities in …

Functional attractors in microbial community assembly

S Estrela, JCC Vila, N Lu, D Bajić, M Rebolleda-Gómez… - Cell Systems, 2022 - cell.com
For microbiome biology to become a more predictive science, we must identify which
descriptive features of microbial communities are reproducible and predictable, which are …

Life history complementarity and the maintenance of biodiversity

K Jops, JP O'Dwyer - Nature, 2023 - nature.com
Life history, the schedule of when and how fast organisms grow, die and reproduce, is a
critical axis along which species differ from each other,,–. In parallel, competition is a …

Higher-order interactions dampen pairwise competition in the zebrafish gut microbiome

D Sundarraman, EA Hay, DM Martins, DS Shields… - MBio, 2020 - Am Soc Microbiol
The microbial communities resident in animal intestines are composed of multiple species
that together play important roles in host development, health, and disease. Due to the …

Effective resource competition model for species coexistence

D Gupta, S Garlaschi, S Suweis, S Azaele, A Maritan - Physical review letters, 2021 - APS
Local coexistence of species in large ecosystems is traditionally explained within the broad
framework of niche theory. However, its rationale hardly justifies rich biodiversity observed in …

Stability criteria for the consumption and exchange of essential resources

T Gibbs, Y Zhang, ZR Miller… - PLoS computational …, 2022 - journals.plos.org
Models of consumer effects on a shared resource environment have helped clarify how the
interplay of consumer traits and resource supply impact stable coexistence. Recent models …

Geometry of ecological coexistence and niche differentiation

E Blumenthal, P Mehta - Physical Review E, 2023 - APS
A fundamental problem in ecology is to understand how competition shapes biodiversity and
species coexistence. Historically, one important approach for addressing this question has …

Macroecological laws in experimental microbial communities

WR Shoemaker, Á Sánchez, J Grilli - bioRxiv, 2023 - biorxiv.org
Ecology has historically benefited by characterizing statistical patterns of biodiversity within
and across communities. This approach, encompassed by the discipline of macroecology …

[HTML][HTML] Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communities

DA Goldman, KS Xue, AB Parrott, RR Jeeda… - bioRxiv, 2023 - ncbi.nlm.nih.gov
The long-term success of introduced populations depends on their initial size and ability to
compete against existing residents, but it remains unclear how these factors collectively …