Ecological modelling approaches for predicting emergent properties in microbial communities
NI van den Berg, D Machado, S Santos… - Nature ecology & …, 2022 - nature.com
Recent studies have brought forward the critical role of emergent properties in shaping
microbial communities and the ecosystems of which they are a part. Emergent properties …
microbial communities and the ecosystems of which they are a part. Emergent properties …
Multi-replicated enrichment communities as a model system in microbial ecology
Recent advances in robotics and affordable genomic sequencing technologies have made it
possible to establish and quantitatively track the assembly of enrichment communities in …
possible to establish and quantitatively track the assembly of enrichment communities in …
Functional attractors in microbial community assembly
For microbiome biology to become a more predictive science, we must identify which
descriptive features of microbial communities are reproducible and predictable, which are …
descriptive features of microbial communities are reproducible and predictable, which are …
Life history complementarity and the maintenance of biodiversity
K Jops, JP O'Dwyer - Nature, 2023 - nature.com
Life history, the schedule of when and how fast organisms grow, die and reproduce, is a
critical axis along which species differ from each other,,–. In parallel, competition is a …
critical axis along which species differ from each other,,–. In parallel, competition is a …
Higher-order interactions dampen pairwise competition in the zebrafish gut microbiome
D Sundarraman, EA Hay, DM Martins, DS Shields… - MBio, 2020 - Am Soc Microbiol
The microbial communities resident in animal intestines are composed of multiple species
that together play important roles in host development, health, and disease. Due to the …
that together play important roles in host development, health, and disease. Due to the …
Effective resource competition model for species coexistence
Local coexistence of species in large ecosystems is traditionally explained within the broad
framework of niche theory. However, its rationale hardly justifies rich biodiversity observed in …
framework of niche theory. However, its rationale hardly justifies rich biodiversity observed in …
Stability criteria for the consumption and exchange of essential resources
Models of consumer effects on a shared resource environment have helped clarify how the
interplay of consumer traits and resource supply impact stable coexistence. Recent models …
interplay of consumer traits and resource supply impact stable coexistence. Recent models …
Geometry of ecological coexistence and niche differentiation
E Blumenthal, P Mehta - Physical Review E, 2023 - APS
A fundamental problem in ecology is to understand how competition shapes biodiversity and
species coexistence. Historically, one important approach for addressing this question has …
species coexistence. Historically, one important approach for addressing this question has …
Macroecological laws in experimental microbial communities
Ecology has historically benefited by characterizing statistical patterns of biodiversity within
and across communities. This approach, encompassed by the discipline of macroecology …
and across communities. This approach, encompassed by the discipline of macroecology …
[HTML][HTML] Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communities
DA Goldman, KS Xue, AB Parrott, RR Jeeda… - bioRxiv, 2023 - ncbi.nlm.nih.gov
The long-term success of introduced populations depends on their initial size and ability to
compete against existing residents, but it remains unclear how these factors collectively …
compete against existing residents, but it remains unclear how these factors collectively …