Deciphering molecular interactions by proximity labeling
Many biological processes are executed and regulated through the molecular interactions of
proteins and nucleic acids. Proximity labeling (PL) is a technology for tagging the …
proteins and nucleic acids. Proximity labeling (PL) is a technology for tagging the …
DamID as a versatile tool for understanding gene regulation
The interaction of proteins and RNA with chromatin underlies the regulation of gene
expression. The ability to profile easily these interactions is fundamental for understanding …
expression. The ability to profile easily these interactions is fundamental for understanding …
[HTML][HTML] Hepatocellular cystathionine γ lyase/hydrogen sulfide attenuates nonalcoholic fatty liver disease by activating farnesoid X receptor
Conclusions FXR sulfhydration is a post‐translational modification affected by hepatic
endogenous CSE/H 2 S that may promote FXR activity and attenuate NAFLD. Hepatic CSE …
endogenous CSE/H 2 S that may promote FXR activity and attenuate NAFLD. Hepatic CSE …
Tn5 DNA transposase in multi-omics research
D Penkov, E Zubkova, Y Parfyonova - Methods and Protocols, 2023 - mdpi.com
Tn5 transposase use in biotechnology has substantially advanced the sequencing
applications of genome-wide analysis of cells. This is mainly due to the ability of Tn5 …
applications of genome-wide analysis of cells. This is mainly due to the ability of Tn5 …
[图书][B] Next-generation sequencing data analysis
X Wang - 2016 - taylorfrancis.com
Next-generation DNA and RNA sequencing has revolutionized biology and medicine. With
sequencing costs continuously dropping and our ability to generate large datasets rising …
sequencing costs continuously dropping and our ability to generate large datasets rising …
Nucleosomal embedding reshapes the dynamics of abasic sites
Apurinic/apyrimidinic (AP) sites are the most common DNA lesions, which benefit from a
most efficient repair by the base excision pathway. The impact of losing a nucleobase on the …
most efficient repair by the base excision pathway. The impact of losing a nucleobase on the …
Mass Spectrometry for Assessing Protein–Nucleic Acid Interactions
Protein− nucleic acid interactions, including the interac-tions of proteins with DNA, RNA, and
DNA/RNA hybrid, often confer important biological consequences to targeted nucleic acids …
DNA/RNA hybrid, often confer important biological consequences to targeted nucleic acids …
Induced proximity labeling and editing for epigenetic research
Epigenetic regulation plays a pivotal role in various biological and disease processes. Two
key lines of investigation have been pursued that aim to unravel endogenous epigenetic …
key lines of investigation have been pursued that aim to unravel endogenous epigenetic …
[HTML][HTML] CSSQ: a ChIP-seq signal quantifier pipeline
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) has revolutionized the
studies of epigenomes and the massive increase in ChIP-seq datasets calls for robust and …
studies of epigenomes and the massive increase in ChIP-seq datasets calls for robust and …
Measuring RNA polymerase activity genome-wide with high-resolution run-on-based methods
A Jordán-Pla, ME Pérez-Martínez, JE Pérez-Ortín - Methods, 2019 - Elsevier
The biogenesis of RNAs is a multi-layered and highly regulated process that involves a
diverse set of players acting in an orchestrated manner throughout the transcription cycle …
diverse set of players acting in an orchestrated manner throughout the transcription cycle …