Wildfire-dependent changes in soil microbiome diversity and function
Forest soil microbiomes have crucial roles in carbon storage, biogeochemical cycling and
rhizosphere processes. Wildfire season length, and the frequency and size of severe fires …
rhizosphere processes. Wildfire season length, and the frequency and size of severe fires …
Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows
Background Single-cell RNA sequencing has been widely adopted to estimate the cellular
composition of heterogeneous tissues and obtain transcriptional profiles of individual cells …
composition of heterogeneous tissues and obtain transcriptional profiles of individual cells …
Spatial immunophenotypes predict response to anti-PD1 treatment and capture distinct paths of T cell evasion in triple negative breast cancer
D Hammerl, JWM Martens, M Timmermans… - Nature …, 2021 - nature.com
Only a subgroup of triple-negative breast cancer (TNBC) responds to immune checkpoint
inhibitors (ICI). To better understand lack of response to ICI, we analyze 681 TNBCs for …
inhibitors (ICI). To better understand lack of response to ICI, we analyze 681 TNBCs for …
[HTML][HTML] ESR1 mutations: Moving towards guiding treatment decision-making in metastatic breast cancer patients
L Angus, N Beije, A Jager, JWM Martens… - Cancer treatment …, 2017 - Elsevier
Mutations in the gene coding for the estrogen receptor (ER), ESR1, have been associated
with acquired endocrine resistance in patients with ER-positive metastatic breast cancer …
with acquired endocrine resistance in patients with ER-positive metastatic breast cancer …
[HTML][HTML] A stem cell zoo uncovers intracellular scaling of developmental tempo across mammals
J Lázaro, M Costanzo, M Sanaki-Matsumiya, C Girardot… - Cell Stem Cell, 2023 - cell.com
Differential speeds in biochemical reactions have been proposed to be responsible for the
differences in developmental tempo between mice and humans. However, the underlying …
differences in developmental tempo between mice and humans. However, the underlying …
Oral famotidine versus placebo in non-hospitalised patients with COVID-19: a randomised, double-blind, data-intense, phase 2 clinical trial
CM Brennan, S Nadella, X Zhao, RJ Dima… - Gut, 2022 - gut.bmj.com
Objective We assessed whether famotidine improved inflammation and symptomatic
recovery in outpatients with mild to moderate COVID-19. Design Randomised, double-blind …
recovery in outpatients with mild to moderate COVID-19. Design Randomised, double-blind …
Widespread hypertranscription in aggressive human cancers
Cancers are often defined by the dysregulation of specific transcriptional programs;
however, the importance of global transcriptional changes is less understood …
however, the importance of global transcriptional changes is less understood …
Whole genome sequencing of metastatic colorectal cancer reveals prior treatment effects and specific metastasis features
PAJ Mendelaar, M Smid, J van Riet, L Angus… - Nature …, 2021 - nature.com
In contrast to primary colorectal cancer (CRC) little is known about the genomic landscape of
metastasized CRC. Here we present whole genome sequencing data of metastases of 429 …
metastasized CRC. Here we present whole genome sequencing data of metastases of 429 …
Cancer germline antigens and tumor-agnostic CD8+ T cell evasion
D Kortleve, RML Coelho, D Hammerl, R Debets - Trends in Immunology, 2022 - cell.com
Cancer germline antigens (CGAs) are expressed in immune-privileged germline tissues,
while epigenetically silenced in somatic tissues. CGAs become re-expressed in tumors and …
while epigenetically silenced in somatic tissues. CGAs become re-expressed in tumors and …
[HTML][HTML] A meta-analysis of RNA-Seq studies to identify novel genes that regulate aging
Aging is a ubiquitous biological process that limits the maximal lifespan of most organisms.
Significant efforts by many groups have identified mechanisms that, when triggered by …
Significant efforts by many groups have identified mechanisms that, when triggered by …