The causes of evolvability and their evolution

JL Payne, A Wagner - Nature Reviews Genetics, 2019 - nature.com
Evolvability is the ability of a biological system to produce phenotypic variation that is both
heritable and adaptive. It has long been the subject of anecdotal observations and …

Empirical fitness landscapes and the predictability of evolution

JAGM De Visser, J Krug - Nature Reviews Genetics, 2014 - nature.com
The genotype–fitness map (that is, the fitness landscape) is a key determinant of evolution,
yet it has mostly been used as a superficial metaphor because we know little about its …

The community-function landscape of microbial consortia

A Sanchez, D Bajic, J Diaz-Colunga, A Skwara… - Cell Systems, 2023 - cell.com
Quantitatively linking the composition and function of microbial communities is a major
aspiration of microbial ecology. Microbial community functions emerge from a complex web …

Evolution in the light of fitness landscape theory

I Fragata, A Blanckaert, MAD Louro, DA Liberles… - Trends in ecology & …, 2019 - cell.com
By formalizing the relationship between genotype or phenotype and fitness, fitness
landscapes harbor information on molecular and evolutionary constraints. The shape of the …

Learning the pattern of epistasis linking genotype and phenotype in a protein

FJ Poelwijk, M Socolich, R Ranganathan - Nature communications, 2019 - nature.com
Understanding the pattern of epistasis—the non-independence of mutations—is critical for
relating genotype and phenotype. However, the combinatorial complexity of potential …

Quantitative analyses of empirical fitness landscapes

IG Szendro, MF Schenk, J Franke, J Krug… - Journal of Statistical …, 2013 - iopscience.iop.org
The concept of a fitness landscape is a powerful metaphor that offers insight into various
aspects of evolutionary processes and guidance for the study of evolution. Until recently …

Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape

DJ Kvitek, G Sherlock - PLoS genetics, 2011 - journals.plos.org
The fitness landscape captures the relationship between genotype and evolutionary fitness
and is a pervasive metaphor used to describe the possible evolutionary trajectories of …

[HTML][HTML] Have you tried turning it off and on again? Oscillating selection to enhance fitness-landscape traversal in adaptive laboratory evolution experiments

AC Carpenter, AM Feist, FSM Harrison… - Metabolic Engineering …, 2023 - Elsevier
Abstract Adaptive Laboratory Evolution (ALE) is a powerful tool for engineering and
understanding microbial physiology. ALE relies on the selection and enrichment of …

Matters of size: genetic bottlenecks in virus infection and their potential impact on evolution

MP Zwart, SF Elena - Annual Review of Virology, 2015 - annualreviews.org
For virus infections of multicellular hosts, narrow genetic bottlenecks during transmission
and within-host spread appear to be widespread. These bottlenecks will affect the …

Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes

AC Palmer, E Toprak, M Baym, S Kim, A Veres… - Nature …, 2015 - nature.com
Predicting evolutionary paths to antibiotic resistance is key for understanding and controlling
drug resistance. When considering a single final resistant genotype, epistatic contingencies …