The causes of evolvability and their evolution
Evolvability is the ability of a biological system to produce phenotypic variation that is both
heritable and adaptive. It has long been the subject of anecdotal observations and …
heritable and adaptive. It has long been the subject of anecdotal observations and …
Empirical fitness landscapes and the predictability of evolution
JAGM De Visser, J Krug - Nature Reviews Genetics, 2014 - nature.com
The genotype–fitness map (that is, the fitness landscape) is a key determinant of evolution,
yet it has mostly been used as a superficial metaphor because we know little about its …
yet it has mostly been used as a superficial metaphor because we know little about its …
The community-function landscape of microbial consortia
Quantitatively linking the composition and function of microbial communities is a major
aspiration of microbial ecology. Microbial community functions emerge from a complex web …
aspiration of microbial ecology. Microbial community functions emerge from a complex web …
Evolution in the light of fitness landscape theory
By formalizing the relationship between genotype or phenotype and fitness, fitness
landscapes harbor information on molecular and evolutionary constraints. The shape of the …
landscapes harbor information on molecular and evolutionary constraints. The shape of the …
Learning the pattern of epistasis linking genotype and phenotype in a protein
FJ Poelwijk, M Socolich, R Ranganathan - Nature communications, 2019 - nature.com
Understanding the pattern of epistasis—the non-independence of mutations—is critical for
relating genotype and phenotype. However, the combinatorial complexity of potential …
relating genotype and phenotype. However, the combinatorial complexity of potential …
Quantitative analyses of empirical fitness landscapes
IG Szendro, MF Schenk, J Franke, J Krug… - Journal of Statistical …, 2013 - iopscience.iop.org
The concept of a fitness landscape is a powerful metaphor that offers insight into various
aspects of evolutionary processes and guidance for the study of evolution. Until recently …
aspects of evolutionary processes and guidance for the study of evolution. Until recently …
Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape
DJ Kvitek, G Sherlock - PLoS genetics, 2011 - journals.plos.org
The fitness landscape captures the relationship between genotype and evolutionary fitness
and is a pervasive metaphor used to describe the possible evolutionary trajectories of …
and is a pervasive metaphor used to describe the possible evolutionary trajectories of …
[HTML][HTML] Have you tried turning it off and on again? Oscillating selection to enhance fitness-landscape traversal in adaptive laboratory evolution experiments
AC Carpenter, AM Feist, FSM Harrison… - Metabolic Engineering …, 2023 - Elsevier
Abstract Adaptive Laboratory Evolution (ALE) is a powerful tool for engineering and
understanding microbial physiology. ALE relies on the selection and enrichment of …
understanding microbial physiology. ALE relies on the selection and enrichment of …
Matters of size: genetic bottlenecks in virus infection and their potential impact on evolution
For virus infections of multicellular hosts, narrow genetic bottlenecks during transmission
and within-host spread appear to be widespread. These bottlenecks will affect the …
and within-host spread appear to be widespread. These bottlenecks will affect the …
Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes
Predicting evolutionary paths to antibiotic resistance is key for understanding and controlling
drug resistance. When considering a single final resistant genotype, epistatic contingencies …
drug resistance. When considering a single final resistant genotype, epistatic contingencies …