Contingency and determinism in evolution: Replaying life's tape

ZD Blount, RE Lenski, JB Losos - Science, 2018 - science.org
BACKGROUND Evolution is a strongly historical process, and evolutionary biology is a field
that combines history and science. How the historical nature of evolution affects the …

(Non) parallel evolution

DI Bolnick, RDH Barrett, KB Oke… - Annual Review of …, 2018 - annualreviews.org
Parallel evolution across replicate populations has provided evolutionary biologists with
iconic examples of adaptation. When multiple populations colonize seemingly similar …

Viral quasispecies evolution

E Domingo, J Sheldon, C Perales - Microbiology and Molecular …, 2012 - Am Soc Microbiol
Evolution of RNA viruses occurs through disequilibria of collections of closely related mutant
spectra or mutant clouds termed viral quasispecies. Here we review the origin of the …

Global epistasis makes adaptation predictable despite sequence-level stochasticity

S Kryazhimskiy, DP Rice, ER Jerison, MM Desai - Science, 2014 - science.org
Epistatic interactions between mutations can make evolutionary trajectories contingent on
the chance occurrence of initial mutations. We used experimental evolution in …

[HTML][HTML] Quasispecies theory and the behavior of RNA viruses

AS Lauring, R Andino - PLoS pathogens, 2010 - journals.plos.org
A large number of medically important viruses, including HIV, hepatitis C virus, and
influenza, have RNA genomes. These viruses replicate with extremely high mutation rates …

Negative epistasis between beneficial mutations in an evolving bacterial population

AI Khan, DM Dinh, D Schneider, RE Lenski, TF Cooper - Science, 2011 - science.org
Epistatic interactions between mutations play a prominent role in evolutionary theories.
Many studies have found that epistasis is widespread, but they have rarely considered …

Experimental design, population dynamics, and diversity in microbial experimental evolution

B Van den Bergh, T Swings, M Fauvart… - … and Molecular Biology …, 2018 - Am Soc Microbiol
In experimental evolution, laboratory-controlled conditions select for the adaptation of
species, which can be monitored in real time. Despite the current popularity of such …

Mutational and fitness landscapes of an RNA virus revealed through population sequencing

A Acevedo, L Brodsky, R Andino - Nature, 2014 - nature.com
RNA viruses exist as genetically diverse populations. It is thought that diversity and genetic
structure of viral populations determine the rapid adaptation observed in RNA viruses and …

Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation

SF Elena, RE Lenski - Nature Reviews Genetics, 2003 - nature.com
Microorganisms have been mutating and evolving on Earth for billions of years. Now, a field
of research has developed around the idea of using microorganisms to study evolution in …

Evolutionary consequences of drug resistance: shared principles across diverse targets and organisms

D Hughes, DI Andersson - Nature Reviews Genetics, 2015 - nature.com
Drug therapy has a crucial role in the treatment of viral, bacterial, fungal and protozoan
infections, as well as the control of human cancer. The success of therapy is being …