Boosting the full potential of PyMOL with structural biology plugins
S Rosignoli, A Paiardini - Biomolecules, 2022 - mdpi.com
Over the past few decades, the number of available structural bioinformatics pipelines,
libraries, plugins, web resources and software has increased exponentially and become …
libraries, plugins, web resources and software has increased exponentially and become …
Protein flexibility in the light of structural alphabets
P Craveur, AP Joseph, J Esque, TJ Narwani… - Frontiers in molecular …, 2015 - frontiersin.org
Protein structures are valuable tools to understand protein function. Nonetheless, proteins
are often considered as rigid macromolecules while their structures exhibit specific flexibility …
are often considered as rigid macromolecules while their structures exhibit specific flexibility …
Comparative genomic analysis of rapidly evolving SARS-CoV-2 reveals mosaic pattern of phylogeographical distribution
The outbreak of coronavirus disease 2019 (COVID-19) that started in Wuhan, China, in
December 2019 has spread worldwide, emerging as a global pandemic. The severe …
December 2019 has spread worldwide, emerging as a global pandemic. The severe …
HKT1; 5 transporter gene expression and association of amino acid substitutions with salt tolerance across rice genotypes
Plants need to maintain a low Na+/K+ ratio for their survival and growth when there is high
sodium concentration in soil. Under these circumstances, the high affinity K+ transporter …
sodium concentration in soil. Under these circumstances, the high affinity K+ transporter …
PSAC-PDB: Analysis and classification of protein structures
This paper presents a novel framework, called PSAC-PDB, for analyzing and classifying
protein structures from the Protein Data Bank (PDB). PSAC-PDB first finds, analyze and …
protein structures from the Protein Data Bank (PDB). PSAC-PDB first finds, analyze and …
[HTML][HTML] Characterization of epitranscriptome reader proteins experimentally and in silico: current knowledge and future perspectives beyond the YTH domain
To date, over 150 chemical modifications to the four canonical RNA bases have been
discovered, known collectively as the epitranscriptome. Many of these modifications have …
discovered, known collectively as the epitranscriptome. Many of these modifications have …
Cis–trans peptide variations in structurally similar proteins
AP Joseph, N Srinivasan, AG De Brevern - Amino Acids, 2012 - Springer
The presence of energetically less favourable cis peptides in protein structures has been
observed to be strongly associated with its structural integrity and function. Inter-conversion …
observed to be strongly associated with its structural integrity and function. Inter-conversion …
Discrete analysis of camelid variable domains: Sequences, structures, and in-silico structure prediction
Antigen binding by antibodies requires precise orientation of the complementarity-
determining region (CDR) loops in the variable domain to establish the correct contact …
determining region (CDR) loops in the variable domain to establish the correct contact …
A novel approach to represent and compare RNA secondary structures
Structural information is crucial in ribonucleic acid (RNA) analysis and functional annotation;
nevertheless, how to include such structural data is still a debated problem. Dot-bracket …
nevertheless, how to include such structural data is still a debated problem. Dot-bracket …
PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins
Posttranslational modifications (PTMs) define covalent and chemical modifications of protein
residues. They play important roles in modulating various biological functions. Current PTM …
residues. They play important roles in modulating various biological functions. Current PTM …