The genomics of coloration provides insights into adaptive evolution

A Orteu, CD Jiggins - Nature Reviews Genetics, 2020 - nature.com
Coloration is an easily quantifiable visual trait that has proven to be a highly tractable system
for genetic analysis and for studying adaptive evolution. The application of genomic …

Inferring balancing selection from genome-scale data

BD Bitarello, DYC Brandt, D Meyer… - Genome biology and …, 2023 - academic.oup.com
The identification of genomic regions and genes that have evolved under natural selection is
a fundamental objective in the field of evolutionary genetics. While various approaches have …

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on variant call format files

SS Dong, WM He, JJ Ji, C Zhang, Y Guo… - Briefings in …, 2021 - academic.oup.com
The triangular correlation heatmap aiming to visualize the linkage disequilibrium (LD)
pattern and haplotype block structure of SNPs is ubiquitous component of population-based …

Avian coloration genetics: recent advances and emerging questions

R Price-Waldman, MC Stoddard - Journal of Heredity, 2021 - academic.oup.com
The colorful phenotypes of birds have long provided rich source material for evolutionary
biologists. Avian plumage, beaks, skin, and eggs—which exhibit a stunning range of cryptic …

An intronic transposon insertion associates with a trans-species color polymorphism in Midas cichlid fishes

CF Kratochwil, AF Kautt, A Nater, A Härer… - Nature …, 2022 - nature.com
Polymorphisms have fascinated biologists for a long time, but their genetic underpinnings
often remain elusive. Here, we aim to uncover the genetic basis of the gold/dark …

Plumage patterns: Ecological functions, evolutionary origins, and advances in quantification

NA Mason, RCK Bowie - The Auk, 2020 - academic.oup.com
Birds exhibit remarkable variation in plumage patterns, both within individual feathers and
among plumage patches. Differences in the size, shape, and location of pigments and …

Extensive hybridization reveals multiple coloration genes underlying a complex plumage phenotype

SM Aguillon, J Walsh, IJ Lovette - Proceedings of the …, 2021 - royalsocietypublishing.org
Coloration is an important target of both natural and sexual selection. Discovering the
genetic basis of colour differences can help us to understand how this visually striking …

The genomics of adaptation in birds

L Campagna, DPL Toews - Current Biology, 2022 - cell.com
Organismal adaptations are the hallmark of natural selection. Studies of adaptations in avian
systems have been central to key conceptual and empirical advances in the field of …

[HTML][HTML] Dog colour patterns explained by modular promoters of ancient canid origin

DL Bannasch, CB Kaelin, A Letko, R Loechel… - Nature ecology & …, 2021 - nature.com
Distinctive colour patterns in dogs are an integral component of canine diversity. Colour
pattern differences are thought to have arisen from mutation and artificial selection during …

Rapid parallel adaptation despite gene flow in silent crickets

X Zhang, JG Rayner, M Blaxter, NW Bailey - Nature Communications, 2021 - nature.com
Gene flow is predicted to impede parallel adaptation via de novo mutation, because it can
introduce pre-existing adaptive alleles from population to population. We test this using …