A roadmap for multi-omics data integration using deep learning

M Kang, E Ko, TB Mersha - Briefings in Bioinformatics, 2022 - academic.oup.com
High-throughput next-generation sequencing now makes it possible to generate a vast
amount of multi-omics data for various applications. These data have revolutionized …

The great immune escape: understanding the divergent immune response in breast cancer subtypes

SS Onkar, NM Carleton, PC Lucas, TC Bruno, AV Lee… - Cancer discovery, 2023 - AACR
Breast cancer, the most common type of cancer affecting women, encompasses a collection
of histologic (mainly ductal and lobular) and molecular subtypes exhibiting diverse clinical …

Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry

C Giesen, HAO Wang, D Schapiro, N Zivanovic… - Nature …, 2014 - nature.com
Mass cytometry enables high-dimensional, single-cell analysis of cell type and state. In
mass cytometry, rare earth metals are used as reporters on antibodies. Analysis of metal …

Exploring the promising potential of induced pluripotent stem cells in cancer research and therapy

M Chehelgerdi, F Behdarvand Dehkordi… - Molecular Cancer, 2023 - Springer
The advent of iPSCs has brought about a significant transformation in stem cell research,
opening up promising avenues for advancing cancer treatment. The formation of cancer is a …

Molecular profiling of breast cancer cell lines defines relevant tumor models and provides a resource for cancer gene discovery

J Kao, K Salari, M Bocanegra, YL Choi, L Girard… - PloS one, 2009 - journals.plos.org
Background Breast cancer cell lines have been used widely to investigate breast cancer
pathobiology and new therapies. Breast cancer is a molecularly heterogeneous disease …

The contribution of gene expression profiling to breast cancer classification, prognostication and prediction: a retrospective of the last decade

B Weigelt, FL Baehner… - The Journal of Pathology …, 2010 - Wiley Online Library
In the last decade, the development of microarrays and the ability to perform massively
parallel gene expression analysis of human tumours were received with great excitement by …

Multiplexed epitope-based tissue imaging for discovery and healthcare applications

B Bodenmiller - Cell systems, 2016 - cell.com
The study of organs and tissues on a molecular level is necessary as we seek an
understanding of health and disease. Over the last few years, powerful highly multiplexed …

[HTML][HTML] Triple-negative breast cancer: present challenges and new perspectives

F Podo, LMC Buydens, H Degani, R Hilhorst, E Klipp… - Molecular …, 2010 - Elsevier
Triple-negative breast cancers (TNBC), characterized by absence of estrogen receptor (ER),
progesterone receptor (PR) and lack of overexpression of human epidermal growth factor …

Recent advances in liposome formulations for breast cancer therapeutics

B Yang, B Song, S Shankar, A Guller… - Cellular and Molecular Life …, 2021 - Springer
Among many nanoparticle-based delivery platforms, liposomes have been particularly
successful with many formulations passed into clinical applications. They are well …

Gene pathways associated with prognosis and chemotherapy sensitivity in molecular subtypes of breast cancer

T Iwamoto, G Bianchini, D Booser, Y Qi… - Journal of the …, 2011 - academic.oup.com
Background We hypothesized that distinct biological processes might be associated with
prognosis and chemotherapy sensitivity in the different types of breast cancers. Methods We …