Transcriptional regulatory elements in the human genome

GA Maston, SK Evans, MR Green - Annu. Rev. Genomics Hum …, 2006 - annualreviews.org
The faithful execution of biological processes requires a precise and carefully orchestrated
set of steps that depend on the proper spatial and temporal expression of genes. Here we …

Locus control regions

Q Li, KR Peterson, X Fang… - Blood, The Journal of …, 2002 - ashpublications.org
Locus control regions (LCRs) are operationally defined by their ability to enhance the
expression of linked genes to physiological levels in a tissue-specific and copy number …

[HTML][HTML] Building regulatory landscapes reveals that an enhancer can recruit cohesin to create contact domains, engage CTCF sites and activate distant genes

NJ Rinzema, K Sofiadis, SJD Tjalsma… - Nature Structural & …, 2022 - nature.com
Developmental gene expression is often controlled by distal regulatory DNA elements called
enhancers. Distant enhancer action is restricted to structural chromosomal domains that are …

[HTML][HTML] Reactivation of developmentally silenced globin genes by forced chromatin looping

W Deng, JW Rupon, I Krivega, L Breda, I Motta… - Cell, 2014 - cell.com
Distal enhancers commonly contact target promoters via chromatin looping. In erythroid
cells, the locus control region (LCR) contacts β-type globin genes in a developmental stage …

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

S Schoenfelder, T Sexton, L Chakalova, NF Cope… - Nature …, 2010 - nature.com
The discovery of interchromosomal interactions in higher eukaryotes points to a functional
interplay between genome architecture and gene expression, challenging the view of …

[HTML][HTML] Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders

L Uusküla-Reimand, H Hou, P Samavarchi-Tehrani… - Genome biology, 2016 - Springer
Abstract Background Type II DNA topoisomerases (TOP2) regulate DNA topology by
generating transient double stranded breaks during replication and transcription …

[HTML][HTML] Interchromosomal interactions and olfactory receptor choice

S Lomvardas, G Barnea, DJ Pisapia, M Mendelsohn… - Cell, 2006 - cell.com
The expression of a single odorant receptor (OR) gene from a large gene family in individual
sensory neurons is an essential feature of the organization and function of the olfactory …

Looping versus linking: toward a model for long-distance gene activation

M Bulger, M Groudine - Genes & development, 1999 - genesdev.cshlp.org
Locus control regions (LCRs) are defined by their ability, in transgenic assays, to direct high-
level, tissue-specific expression of linked genes at all sites of integration examined and at …

Spatial organization of gene expression: the active chromatin hub

W de Laat, F Grosveld - Chromosome Research, 2003 - Springer
Developmental and tissue-specific expression of higher eukaryotic genes involves activation
of transcription at the appropriate time and place and keeping it silent otherwise. Unlike …

Size matters: use of YACs, BACs and PACs in transgenic animals

P Giraldo, L Montoliu - Transgenic research, 2001 - Springer
In 1993, several groups, working independently, reported the successful generation of
transgenic mice with yeast artificial chromosomes (YACs) using standard techniques. The …