Diversity in Genetic In Vivo Methods for Protein-Protein Interaction Studies: from the Yeast Two-Hybrid System to the Mammalian Split-Luciferase System

B Stynen, H Tournu, J Tavernier… - … and molecular biology …, 2012 - Am Soc Microbiol
The yeast two-hybrid system pioneered the field of in vivo protein-protein interaction
methods and undisputedly gave rise to a palette of ingenious techniques that are constantly …

Nap1: taking a closer look at a juggler protein of extraordinary skills

J Zlatanova, C Seebart, M Tomschik - The FASEB Journal, 2007 - Wiley Online Library
The nucleosome assembly protein Nap1 is used extensively in the chromatin field to
reconstitute nucleosomal templates for structural and functional studies. Beyond its role in …

Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator

AL Sanborn, BT Yeh, JT Feigerle, CV Hao… - Elife, 2021 - elifesciences.org
Gene activator proteins comprise distinct DNA-binding and transcriptional activation
domains (ADs). Because few ADs have been described, we tested domains tiling all yeast …

[HTML][HTML] Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis

G Haimovich, DA Medina, SZ Causse, M Garber… - Cell, 2013 - cell.com
Maintaining proper mRNA levels is a key aspect in the regulation of gene expression. The
balance between mRNA synthesis and decay determines these levels. We demonstrate that …

Opposing effects of glutamine and asparagine govern prion formation by intrinsically disordered proteins

R Halfmann, S Alberti, R Krishnan, N Lyle… - Molecular cell, 2011 - cell.com
Sequences rich in glutamine (Q) and asparagine (N) residues often fail to fold at the
monomer level. This, coupled to their unusual hydrogen-bonding abilities, provides the …

Succinate inhibition of α-ketoglutarate-dependent enzymes in a yeast model of paraganglioma

EH Smith, R Janknecht… - Human molecular …, 2007 - academic.oup.com
The tricarboxylic acid (TCA) cycle enzyme succinate dehydrogenase (SDH) is a tumor
suppressor. Heterozygosity for defective SDH subunit genes predisposes to familial …

[HTML][HTML] Nine-amino-acid transactivation domain: establishment and prediction utilities

S Piskacek, M Gregor, M Nemethova, M Grabner… - Genomics, 2007 - Elsevier
Here we describe the establishment and prediction utilities for a novel nine-amino-acid
transactivation domain, 9aa TAD, that is common to the transactivation domains of a large …

A scalable method for integration and functional analysis of multiple microarray datasets

C Huttenhower, M Hibbs, C Myers… - …, 2006 - academic.oup.com
Motivation: The diverse microarray datasets that have become available over the past
several years represent a rich opportunity and challenge for biological data mining. Many …

A tetracycline-repressible transactivator system to study essential genes in malaria parasites

P Pino, S Sebastian, EBA Kim, E Bush, M Brochet… - Cell host & …, 2012 - cell.com
A major obstacle in analyzing gene function in apicomplexan parasites is the absence of a
practical regulatable expression system. Here, we identified functional transcriptional …

The regulation of zinc homeostasis by the ZafA transcriptional activator is essential for Aspergillus fumigatus virulence

MÁ Moreno, O Ibrahim‐Granet… - Molecular …, 2007 - Wiley Online Library
We have previously shown that Aspergillus fumigatus is able to grow in zinc‐limiting media
and that this ability is regulated at transcriptional level by both the availability of zinc and pH …