Mass spectrometry-based protein footprinting for higher-order structure analysis: fundamentals and applications

XR Liu, MM Zhang, ML Gross - Chemical reviews, 2020 - ACS Publications
Proteins adopt different higher-order structures (HOS) to enable their unique biological
functions. Understanding the complexities of protein higher-order structures and dynamics …

Oxidative modifications to cellular components in plants

IM Møller, PE Jensen, A Hansson - Annu. Rev. Plant Biol., 2007 - annualreviews.org
Reactive oxygen species (ROS) and reactive nitrogen species (RNS) are produced in many
places in living cells and at an increased rate during biotic or abiotic stress. ROS and RNS …

Hydroxyl radical protein footprinting: a mass spectrometry-based structural method for studying the higher order structure of proteins

A McKenzie-Coe, NS Montes, LM Jones - Chemical reviews, 2021 - ACS Publications
Hydroxyl radical protein footprinting (HRPF) coupled to mass spectrometry has been
successfully used to investigate a plethora of protein-related questions. The method, which …

Hydroxyl radical-mediated modification of proteins as probes for structural proteomics

G Xu, MR Chance - Chemical reviews, 2007 - ACS Publications
“Footprinting” refers to assays that examine ligand binding and conformational changes by
determining the solvent accessibility of the backbone, bases, or side chain structures of …

Activation of tumor suppressor protein PP2A inhibits KRAS-driven tumor growth

J Sangodkar, A Perl, R Tohme, J Kiselar… - The Journal of …, 2017 - Am Soc Clin Investig
Targeted cancer therapies, which act on specific cancer-associated molecular targets, are
predominantly inhibitors of oncogenic kinases. While these drugs have achieved some …

Amino acid oxidation of the D1 and D2 proteins by oxygen radicals during photoinhibition of Photosystem II

R Kale, AE Hebert, LK Frankel… - Proceedings of the …, 2017 - National Acad Sciences
The Photosystem II reaction center is vulnerable to photoinhibition. The D1 and D2 proteins,
lying at the core of the photosystem, are susceptible to oxidative modification by reactive …

Radiolytic protein footprinting with mass spectrometry to probe the structure of macromolecular complexes

K Takamoto, MR Chance - Annu. Rev. Biophys. Biomol. Struct., 2006 - annualreviews.org
Structural proteomics approaches using mass spectrometry are increasingly used in biology
to examine the composition and structure of macromolecules. Hydroxyl radical–mediated …

Fast photochemical oxidation of protein footprints faster than protein unfolding

BC Gau, JS Sharp, DL Rempel, ML Gross - Analytical chemistry, 2009 - ACS Publications
Fast photochemical oxidation of proteins (FPOP) is a chemical footprinting method whereby
exposed amino-acid residues are covalently labeled by oxidation with hydroxyl radicals …

Covalent labeling-mass spectrometry with non-specific reagents for studying protein structure and interactions

P Limpikirati, T Liu, RW Vachet - Methods, 2018 - Elsevier
Using mass spectrometry (MS) to obtain information about a higher order structure of protein
requires that a protein's structural properties are encoded into the mass of that protein …

Protein structure and dynamics studied by mass spectrometry: H/D exchange, hydroxyl radical labeling, and related approaches

L Konermann, X Tong, Y Pan - Journal of Mass Spectrometry, 2008 - Wiley Online Library
Mass spectrometry (MS) plays a central role in studies on protein structure and dynamics.
This review highlights some of the recent developments in this area, with focus on …