Determinants of the rate of protein sequence evolution

J Zhang, JR Yang - Nature Reviews Genetics, 2015 - nature.com
The rate and mechanism of protein sequence evolution have been central questions in
evolutionary biology since the 1960s. Although the rate of protein sequence evolution …

ERK1 and ERK2 map kinases: specific roles or functional redundancy?

R Buscà, J Pouysségur, P Lenormand - Frontiers in cell and …, 2016 - frontiersin.org
The MAP kinase signaling cascade Ras/Raf/MEK/ERK has been involved in a large variety
of cellular and physiological processes that are crucial for life. Many pathological situations …

Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

W Fu, TD O'connor, G Jun, HM Kang, G Abecasis… - Nature, 2013 - nature.com
Establishing the age of each mutation segregating in contemporary human populations is
important to fully understand our evolutionary history, and will help to facilitate the …

A benchmark of gene expression tissue-specificity metrics

N Kryuchkova-Mostacci… - Briefings in …, 2017 - academic.oup.com
One of the major properties of genes is their expression pattern. Notably, genes are often
classified as tissue specific or housekeeping. This property is of interest to molecular …

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution

DA Drummond, CO Wilke - Cell, 2008 - cell.com
Strikingly consistent correlations between rates of coding-sequence evolution and gene
expression levels are apparent across taxa, but the biological causes behind the selective …

The 3D architecture of the pepper genome and its relationship to function and evolution

Y Liao, J Wang, Z Zhu, Y Liu, J Chen, Y Zhou… - Nature …, 2022 - nature.com
The organization of chromatin into self-interacting domains is universal among eukaryotic
genomes, though how and why they form varies considerably. Here we report a …

Evolution of protein-coding genes in Drosophila

AM Larracuente, TB Sackton, AJ Greenberg, A Wong… - Trends in Genetics, 2008 - cell.com
Several contributing factors have been implicated in evolutionary rate heterogeneity among
proteins, but their evolutionary mechanisms remain poorly characterized. The recently …

Natural selection on genes that underlie human disease susceptibility

R Blekhman, O Man, L Herrmann, AR Boyko, A Indap… - Current biology, 2008 - cell.com
What evolutionary forces shape genes that contribute to the risk of human disease? Do
similar selective pressures act on alleles that underlie simple versus complex disorders [1 …

Null mutations in human and mouse orthologs frequently result in different phenotypes

BY Liao, J Zhang - Proceedings of the National Academy of …, 2008 - National Acad Sciences
One-to-one orthologous genes of relatively closely related species are widely assumed to
have similar functions and cause similar phenotypes when deleted from the genome …

Protein misinteraction avoidance causes highly expressed proteins to evolve slowly

JR Yang, BY Liao, SM Zhuang… - Proceedings of the …, 2012 - National Acad Sciences
The tempo and mode of protein evolution have been central questions in biology. Genomic
data have shown a strong influence of the expression level of a protein on its rate of …