Plant–microbiome interactions: from community assembly to plant health

P Trivedi, JE Leach, SG Tringe, T Sa… - Nature reviews …, 2020 - nature.com
Healthy plants host diverse but taxonomically structured communities of microorganisms, the
plant microbiota, that colonize every accessible plant tissue. Plant-associated microbiomes …

Mechanisms and strategies of plant microbiome interactions to mitigate abiotic stresses

N Munir, M Hanif, Z Abideen, M Sohail, A El-Keblawy… - Agronomy, 2022 - mdpi.com
Abiotic stresses are the most significant factors reducing agricultural productivity. Plants face
extreme environmental conditions that may affect their biological mechanisms, thereby …

[PDF][PDF] QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet… - 2018 - peerj.com
We present QIIME 2, an opensource microbiome data science platform accessible to users
spanning the microbiome research ecosystem, from scientists and engineers to clinicians …

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

E Bolyen, JR Rideout, MR Dillon, NA Bokulich… - Nature …, 2019 - nature.com
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …

Forest tree growth is linked to mycorrhizal fungal composition and function across Europe

MA Anthony, TW Crowther, S Van Der Linde… - The ISME …, 2022 - academic.oup.com
Most trees form symbioses with ectomycorrhizal fungi (EMF) which influence access to
growth-limiting soil resources. Mesocosm experiments repeatedly show that EMF species …

Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics

C Gao, L Montoya, L Xu, M Madera… - Nature …, 2020 - nature.com
Community assembly of crop-associated fungi is thought to be strongly influenced by
deterministic selection exerted by the plant host, rather than stochastic processes. Here we …

How soil biota drive ecosystem stability

G Yang, C Wagg, SD Veresoglou, S Hempel… - Trends in plant …, 2018 - cell.com
High biodiversity aboveground tends to increase the stability of ecosystem functioning when
faced with a changing environment. However, whether and how soil biota affect ecosystem …

Eco‐evolution on the edge during climate change

CP Nadeau, MC Urban - Ecography, 2019 - Wiley Online Library
We urgently need to predict species responses to climate change to minimize future
biodiversity loss and ensure we do not waste limited resources on ineffective conservation …

Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

SP Brown, MA Grillo, JC Podowski, KD Heath - Microbiome, 2020 - Springer
Background Understanding the genetic and environmental factors that structure plant
microbiomes is necessary for leveraging these interactions to address critical needs in …

Climate disruption of plant-microbe interactions

JA Rudgers, ME Afkhami, L Bell-Dereske… - Annual review of …, 2020 - annualreviews.org
Interactions between plants and microbes have important influences on evolutionary
processes, population dynamics, community structure, and ecosystem function. We review …