Bioinformatics and drug discovery

X Xia - Current topics in medicinal chemistry, 2017 - ingentaconnect.com
Bioinformatic analysis can not only accelerate drug target identification and drug candidate
screening and refinement, but also facilitate characterization of side effects and predict drug …

Ubiquitin-specific proteases: players in cancer cellular processes

L Cruz, P Soares, M Correia - Pharmaceuticals, 2021 - mdpi.com
Ubiquitination represents a post-translational modification (PTM) essential for the
maintenance of cellular homeostasis. Ubiquitination is involved in the regulation of protein …

Spotlight on USP4: structure, function, and regulation

B Hu, D Zhang, K Zhao, Y Wang, L Pei… - Frontiers in Cell and …, 2021 - frontiersin.org
The deubiquitinating enzyme (DUB)–mediated cleavage of ubiquitin plays a critical role in
balancing protein synthesis and degradation. Ubiquitin-specific protease 4 (USP4), a …

[图书][B] Bioinformatics and the cell: modern computational approaches in genomics, proteomics and transcriptomics

X Xia - 2018 - books.google.com
This second edition integrates the more technical and mathematical aspects of
bioinformatics with concrete examples of their application to current research problems in …

USP4 function and multifaceted roles in cancer: a possible and potential therapeutic target

Y Wang, L Zhou, J Lu, B Jiang, C Liu, J Guo - Cancer cell international, 2020 - Springer
Cancer remains one of the major culprits causing disease-related deaths and leads to a
high morbidity and similar mortality. Insidious onset, difficult early detection and a lack of …

The deubiquitylase USP15 regulates topoisomerase II alpha to maintain genome integrity

AB Fielding, M Concannon, S Darling… - Oncogene, 2018 - nature.com
Abstract Ubiquitin-specific protease 15 (USP15) is a widely expressed deubiquitylase that
has been implicated in diverse cellular processes in cancer. Here we identify topoisomerase …

The evolution and functional diversification of the deubiquitinating enzyme superfamily

C Vlasschaert, D Cook, X Xia… - Genome Biology and …, 2017 - academic.oup.com
Ubiquitin and ubiquitin-like molecules are attached to and removed from cellular proteins in
a dynamic and highly regulated manner. Deubiquitinating enzymes are critical to this …

Rainbow trout USP4 downregulates LPS-induced inflammation by removing the K63-linked ubiquitin chain on TAK1

JH Jang, IY Jung, H Kim, JH Cho - Fish & Shellfish Immunology, 2022 - Elsevier
Abstract Ubiquitin-specific protease 4 (USP4) is pivotal in negatively regulating the Toll-like
receptor (TLR) signaling-mediated innate immune response. Although USP4 has been well …

Arsda: A new approach for storing, transmitting and analyzing transcriptomic data

X Xia - G3: Genes, Genomes, Genetics, 2017 - academic.oup.com
Two major stumbling blocks exist in high-throughput sequencing (HTS) data analysis. The
first is the sheer file size, typically in gigabytes when uncompressed, causing problems in …

RNA-Seq approach for accurate characterization of splicing efficiency of yeast introns

X Xia - Methods, 2020 - Elsevier
Introns in different genes, or even different introns within the same gene, often have different
splice sites and differ in splicing efficiency (SE). One expects mass-transcribed genes to …