How retrotransposons shape genome regulation

P Mita, JD Boeke - Current opinion in genetics & development, 2016 - Elsevier
Retrotransposons are mutagenic units able to move within the genome. Despite many
defenses deployed by the host to suppress potentially harmful activities of retrotransposons …

“What you need, baby, I got it”: Transposable elements as suppliers of cis-operating sequences in drosophila

R Moschetti, A Palazzo, P Lorusso, L Viggiano… - Biology, 2020 - mdpi.com
Transposable elements (TEs) are constitutive components of both eukaryotic and
prokaryotic genomes. The role of TEs in the evolution of genes and genomes has been …

Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila

M Merenciano, A Ullastres, MAR de Cara… - PLoS …, 2016 - journals.plos.org
Promoters are structurally and functionally diverse gene regulatory regions. The presence or
absence of sequence motifs and the spacing between the motifs defines the properties of …

High-Fat Diet Propelled AOM/DSS-Induced Colitis-Associated Colon Cancer Alleviated by Administration of Aster glehni via STAT3 Signaling Pathway

BR Jin, KS Chung, M Lee, HJ An - Biology, 2020 - mdpi.com
Many epidemiological observational studies suggest that a high-fat diet (HFD) accelerates
the risk of colorectal cancer (CRC). Inflammation can play a key role in the relationship …

Tudor knockdown disrupts ovary development in Bactrocera dorsalis

YF Xie, F Shang, BY Ding, YB Wu, JZ Niu… - Insect molecular …, 2019 - Wiley Online Library
One of the main functions of the piwi‐interacting RNA pathway is the post‐transcriptional
silencing of transposable elements in the germline of many species. In insects, proteins …

Dynamics of nuclear matrix attachment regions during 5th instar posterior silk gland development in Bombyx mori

AR Chunduri, R Rajan, A Lima, S Ramamoorthy… - BMC genomics, 2022 - Springer
Background Chromatin architecture is critical for gene expression during development.
Matrix attachment regions (MARs) control and regulate chromatin dynamics. The position of …

A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster

M Merenciano, C Iacometti, J González - Mobile DNA, 2019 - Springer
Transposable elements (TEs) are not randomly distributed in the genome. A genome-wide
analysis of the D. melanogaster genome found that differences in TE density across 50 kb …

[HTML][HTML] Nuclear matrix–structure, function and pathogenesis

P Wasąg, R Lenartowski - Advances in Hygiene and Experimental …, 2016 - phmd.pl
The nuclear matrix (NM), or nuclear skeleton, is the non-chromatin, ribonucleoproteinaceous
framework that is resistant to high ionic strength buffers, nonionic detergents, and nucleolytic …

Expanding Flp-RMCE options: the potential of recombinase mediated twin-site targeting (RMTT)

S Turan, J Qiao, S Madden, C Benham, M Kotz… - Gene, 2014 - Elsevier
Where possible, developments enabling the establishment of cell lines with predictable,
long-term stable expression capacity are based on single-copy integrations at safe genomic …

In situ nuclear matrix preparation in Drosophila melanogaster embryos/tissues and its use in studying the components of nuclear architecture

RU Pathak, A Bihani, R Sureka, P Varma, RK Mishra - Nucleus, 2022 - Taylor & Francis
The study of nuclear matrix (NuMat) over the last 40 years has been limited to either isolated
nuclei from tissues or cells grown in culture. Here, we provide a protocol for NuMat …