Towards a comprehensive catalogue of validated and target-linked human enhancers

M Gasperini, JM Tome, J Shendure - Nature Reviews Genetics, 2020 - nature.com
The human gene catalogue is essentially complete, but we lack an equivalently vetted
inventory of bona fide human enhancers. Hundreds of thousands of candidate enhancers …

Chromatin accessibility: a window into the genome

M Tsompana, MJ Buck - Epigenetics & chromatin, 2014 - Springer
Transcriptional activation throughout the eukaryotic lineage has been tightly linked with
disruption of nucleosome organization at promoters, enhancers, silencers, insulators and …

Index and biological spectrum of human DNase I hypersensitive sites

W Meuleman, A Muratov, E Rynes, J Halow, K Lee… - Nature, 2020 - nature.com
DNase I hypersensitive sites (DHSs) are generic markers of regulatory DNA,,,–and contain
genetic variations associated with diseases and phenotypic traits,–. We created high …

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns

S John, PJ Sabo, RE Thurman, MH Sung, SC Biddie… - Nature …, 2011 - nature.com
Abstract Development, differentiation and response to environmental stimuli are
characterized by sequential changes in cellular state initiated by the de novo binding of …

High-resolution mapping and characterization of open chromatin across the genome

AP Boyle, S Davis, HP Shulha, P Meltzer, EH Margulies… - Cell, 2008 - cell.com
Summary Mapping DNase I hypersensitive (HS) sites is an accurate method of identifying
the location of genetic regulatory elements, including promoters, enhancers, silencers …

[HTML][HTML] Circuitry and dynamics of human transcription factor regulatory networks

S Neph, AB Stergachis, A Reynolds, R Sandstrom… - Cell, 2012 - cell.com
The combinatorial cross-regulation of hundreds of sequence-specific transcription factors
(TFs) defines a regulatory network that underlies cellular identity and function. Here we use …

Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA

JM Simon, PG Giresi, IJ Davis, JD Lieb - Nature protocols, 2012 - nature.com
Eviction or destabilization of nucleosomes from chromatin is a hallmark of functional
regulatory elements in eukaryotic genomes. Historically identified by nuclease …

[PDF][PDF] Organization and expression of eucaryotic split genes coding for proteins

R Breathnach, P Chambon - Annual review of biochemistry, 1981 - researchgate.net
GLOBIN GENES Hemoglobin is composed of heme residues and two chains each of a-like
and, B-like globin polypeptides. Each type of chain is encoded by a family of genes under …

A 5′ element of the chicken β-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila

JH Chung, M Whiteley, G Felsenfeld - Cell, 1993 - cell.com
We have characterized an element near the 5'boundary of the chicken~-globin domain that
insulates a reporter gene from the activating effects of a nearby p-globin locus control region …

[HTML][HTML] Potential mechanisms of metabolic imprinting that lead to chronic disease

RA Waterland, C Garza - The American journal of clinical nutrition, 1999 - Elsevier
This review synthesizes a subset of human epidemiologic and experimental animal studies
that suggest that early nutrition affects susceptibility to chronic diseases in adulthood. These …