Nonadditive gene expression in polyploids

MJ Yoo, X Liu, JC Pires, PS Soltis… - Annual review of …, 2014 - annualreviews.org
Allopolyploidy involves hybridization and duplication of divergent parental genomes and
provides new avenues for gene expression. The expression levels of duplicated genes in …

The multiple fates of gene duplications: deletion, hypofunctionalization, subfunctionalization, neofunctionalization, dosage balance constraints, and neutral variation

JA Birchler, H Yang - The Plant Cell, 2022 - academic.oup.com
Gene duplications have long been recognized as a contributor to the evolution of genes with
new functions. Multiple copies of genes can result from tandem duplication, from …

Insights into land plant evolution garnered from the Marchantia polymorpha genome

JL Bowman, T Kohchi, KT Yamato, J Jenkins, S Shu… - Cell, 2017 - cell.com
The evolution of land flora transformed the terrestrial environment. Land plants evolved from
an ancestral charophycean alga from which they inherited developmental, biochemical, and …

Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

One hundred years of gene balance: how stoichiometric issues affect gene expression, genome evolution, and quantitative traits

JA Birchler, RA Veitia - Cytogenetic and Genome Research, 2022 - karger.com
A century ago experiments with the flowering plant Datura stramonium and the fruit fly
Drosophila melanogaster revealed that adding an extra chromosome to a karyotype was …

Widespread whole genome duplications contribute to genome complexity and species diversity in angiosperms

R Ren, H Wang, C Guo, N Zhang, L Zeng, Y Chen… - Molecular plant, 2018 - cell.com
Gene duplications provide evolutionary potentials for generating novel functions, while
polyploidization or whole genome duplication (WGD) doubles the chromosomes initially and …

Phylotranscriptomics resolves the phylogeny of Pooideae and uncovers factors for their adaptive evolution

L Zhang, X Zhu, Y Zhao, J Guo, T Zhang… - Molecular Biology …, 2022 - academic.oup.com
Adaptation to cool climates has occurred several times in different angiosperm groups.
Among them, Pooideae, the largest grass subfamily with∼ 3,900 species including wheat …

Macroevolutionary dynamics in the early diversification of Asteraceae

JL Panero, BS Crozier - Molecular phylogenetics and evolution, 2016 - Elsevier
Spatial and temporal differences in ecological opportunity can result in disparity of net
species diversification rates and consequently uneven distribution of taxon richness across …

The Acer truncatum genome provides insights into nervonic acid biosynthesis

Q Ma, T Sun, S Li, J Wen, L Zhu, T Yin, K Yan… - The Plant …, 2020 - Wiley Online Library
Acer truncatum (purpleblow maple) is a woody tree species that produces seeds with high
levels of valuable fatty acids (especially nervonic acid). However, the lack of a complete …

Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the Cryptic Paramecium Complex

JF Gout, Y Hao, P Johri, O Arnaiz… - Molecular biology …, 2023 - academic.oup.com
Whole-genome duplications (WGDs) have shaped the gene repertoire of many eukaryotic
lineages. The redundancy created by WGDs typically results in a phase of massive gene …