Exploring the human microbiome from multiple perspectives: factors altering its composition and function

D Rojo, C Méndez-García… - FEMS microbiology …, 2017 - academic.oup.com
Our microbiota presents peculiarities and characteristics that may be altered by multiple
factors. The degree and consequences of these alterations depend on the nature, strength …

Single-cell analysis and spatial resolution of the gut microbiome

B Madhu, BM Miller, M Levy - Frontiers in Cellular and Infection …, 2023 - frontiersin.org
Over the past decade it has become clear that various aspects of host physiology,
metabolism, and immunity are intimately associated with the microbiome and its interactions …

A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach

C d'Humières, M Touchon, S Dion, J Cury… - Scientific Reports, 2019 - nature.com
The microbiota of the human gut is a complex and rich community where bacteria and their
viruses, the bacteriophages, are dominant. There are few studies on the phage community …

Biases in viral metagenomics-based detection, cataloguing and quantification of bacteriophage genomes in human faeces, a review

J Callanan, SR Stockdale, A Shkoporov, LA Draper… - Microorganisms, 2021 - mdpi.com
The human gut is colonised by a vast array of microbes that include bacteria, viruses, fungi,
and archaea. While interest in these microbial entities has largely focused on the bacterial …

Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter

M Garcia‐Garcera, M Touchon, S Brisse… - Environmental …, 2017 - Wiley Online Library
Most bacteria have poorly characterized environmental reservoirs and unknown closely
related species. This hampers the study of bacterial evolutionary ecology because both the …

[HTML][HTML] Expanding a wastewater-based surveillance methodology for DNA isolation from a workflow optimized for SARS-CoV-2 RNA quantification

KM Babler, ME Sharkey, A Amirali… - Journal of …, 2023 - ncbi.nlm.nih.gov
Wastewater-based surveillance (WBS) is a noninvasive, epidemiological strategy for
assessing the spread of COVID-19 in communities. This strategy was based upon …

Leuconostoc mesenteroides and Leuconostoc pseudomesenteroides bacteriophages: Genomics and cross-species host ranges

SA Pujato, DM Guglielmotti, M Martinez-Garcia… - International journal of …, 2017 - Elsevier
Unveiling virus-host interactions are relevant for understanding the biology and evolution of
microbes globally, but in particular, it has also a paramount impact on the manufacture of …

Direct sequencing of human gut virome fractions obtained by flow cytometry

M Džunková, G D'Auria, A Moya - Frontiers in microbiology, 2015 - frontiersin.org
The sequence assembly of the human gut virome encounters several difficulties. A high
proportion of human and bacterial matches is detected in purified viral samples. Viral DNA …

Optimisation and application of a novel method to identify bacteriophages in maternal milk and infant stool identifies host-phage communities within preterm infant gut

GR Young, WC Yew, A Nelson, SH Bridge… - Frontiers in …, 2022 - frontiersin.org
Human milk oligosaccharides, proteins, such as lactoferrin, and bacteria represent just some
of the bioactive components of mother's breast milk (BM). Bacteriophages (viruses that infect …

The human gut phageome: identification and roles in the diseases

M Nabi-Afjadi, S Teymouri… - Journal of Cellular …, 2023 - scientificarchives.com
The human gut is a complex environment that contains a diversity of microorganisms
commonly known as the microbiome. Numerous factors influence the composition of human …