Advancing medical imaging informatics by deep learning-based domain adaptation
Introduction: There has been a rapid development of deep learning (DL) models for medical
imaging. However, DL requires a large labeled dataset for training the models. Getting large …
imaging. However, DL requires a large labeled dataset for training the models. Getting large …
Semantic image segmentation: Two decades of research
Semantic image segmentation (SiS) plays a fundamental role in a broad variety of computer
vision applications, providing key information for the global understanding of an image. This …
vision applications, providing key information for the global understanding of an image. This …
Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations
D Karimi, SK Warfield, A Gholipour - Artificial intelligence in medicine, 2021 - Elsevier
We present a critical assessment of the role of transfer learning in training fully convolutional
networks (FCNs) for medical image segmentation. We first show that although transfer …
networks (FCNs) for medical image segmentation. We first show that although transfer …
Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks
The spinal cord is frequently affected by atrophy and/or lesions in multiple sclerosis (MS)
patients. Segmentation of the spinal cord and lesions from MRI data provides measures of …
patients. Segmentation of the spinal cord and lesions from MRI data provides measures of …
Unsupervised domain adaptation via disentangled representations: Application to cross-modality liver segmentation
A deep learning model trained on some labeled data from a certain source domain
generally performs poorly on data from different target domains due to domain shifts …
generally performs poorly on data from different target domains due to domain shifts …
Domain generalizer: A few-shot meta learning framework for domain generalization in medical imaging
P Khandelwal, P Yushkevich - … MICCAI Workshop, DART 2020, and First …, 2020 - Springer
Deep learning models perform best when tested on target (test) data domains whose
distribution is similar to the set of source (train) domains. However, model generalization can …
distribution is similar to the set of source (train) domains. However, model generalization can …
Anatomy of domain shift impact on U-Net layers in MRI segmentation
Abstract Domain Adaptation (DA) methods are widely used in medical image segmentation
tasks to tackle the problem of differently distributed train (source) and test (target) data. We …
tasks to tackle the problem of differently distributed train (source) and test (target) data. We …
First U-Net layers contain more domain specific information than the last ones
MRI scans appearance significantly depends on scanning protocols and, consequently, the
data-collection institution. These variations between clinical sites result in dramatic drops of …
data-collection institution. These variations between clinical sites result in dramatic drops of …
[HTML][HTML] A modality-adaptive method for segmenting brain tumors and organs-at-risk in radiation therapy planning
M Agn, PM af Rosenschöld, O Puonti… - Medical image …, 2019 - Elsevier
In this paper we present a method for simultaneously segmenting brain tumors and an
extensive set of organs-at-risk for radiation therapy planning of glioblastomas. The method …
extensive set of organs-at-risk for radiation therapy planning of glioblastomas. The method …
Critical assessment of transfer learning for medical image segmentation with fully convolutional neural networks
D Karimi, SK Warfield, A Gholipour - arXiv preprint arXiv:2006.00356, 2020 - arxiv.org
Transfer learning is widely used for training machine learning models. Here, we study the
role of transfer learning for training fully convolutional networks (FCNs) for medical image …
role of transfer learning for training fully convolutional networks (FCNs) for medical image …