Advancing medical imaging informatics by deep learning-based domain adaptation

A Choudhary, L Tong, Y Zhu… - Yearbook of medical …, 2020 - thieme-connect.com
Introduction: There has been a rapid development of deep learning (DL) models for medical
imaging. However, DL requires a large labeled dataset for training the models. Getting large …

Semantic image segmentation: Two decades of research

G Csurka, R Volpi, B Chidlovskii - Foundations and Trends® …, 2022 - nowpublishers.com
Semantic image segmentation (SiS) plays a fundamental role in a broad variety of computer
vision applications, providing key information for the global understanding of an image. This …

Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations

D Karimi, SK Warfield, A Gholipour - Artificial intelligence in medicine, 2021 - Elsevier
We present a critical assessment of the role of transfer learning in training fully convolutional
networks (FCNs) for medical image segmentation. We first show that although transfer …

Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks

C Gros, B De Leener, A Badji, J Maranzano, D Eden… - Neuroimage, 2019 - Elsevier
The spinal cord is frequently affected by atrophy and/or lesions in multiple sclerosis (MS)
patients. Segmentation of the spinal cord and lesions from MRI data provides measures of …

Unsupervised domain adaptation via disentangled representations: Application to cross-modality liver segmentation

J Yang, NC Dvornek, F Zhang, J Chapiro… - … Image Computing and …, 2019 - Springer
A deep learning model trained on some labeled data from a certain source domain
generally performs poorly on data from different target domains due to domain shifts …

Domain generalizer: A few-shot meta learning framework for domain generalization in medical imaging

P Khandelwal, P Yushkevich - … MICCAI Workshop, DART 2020, and First …, 2020 - Springer
Deep learning models perform best when tested on target (test) data domains whose
distribution is similar to the set of source (train) domains. However, model generalization can …

Anatomy of domain shift impact on U-Net layers in MRI segmentation

I Zakazov, B Shirokikh, A Chernyavskiy… - … Image Computing and …, 2021 - Springer
Abstract Domain Adaptation (DA) methods are widely used in medical image segmentation
tasks to tackle the problem of differently distributed train (source) and test (target) data. We …

First U-Net layers contain more domain specific information than the last ones

B Shirokikh, I Zakazov, A Chernyavskiy… - Domain Adaptation and …, 2020 - Springer
MRI scans appearance significantly depends on scanning protocols and, consequently, the
data-collection institution. These variations between clinical sites result in dramatic drops of …

[HTML][HTML] A modality-adaptive method for segmenting brain tumors and organs-at-risk in radiation therapy planning

M Agn, PM af Rosenschöld, O Puonti… - Medical image …, 2019 - Elsevier
In this paper we present a method for simultaneously segmenting brain tumors and an
extensive set of organs-at-risk for radiation therapy planning of glioblastomas. The method …

Critical assessment of transfer learning for medical image segmentation with fully convolutional neural networks

D Karimi, SK Warfield, A Gholipour - arXiv preprint arXiv:2006.00356, 2020 - arxiv.org
Transfer learning is widely used for training machine learning models. Here, we study the
role of transfer learning for training fully convolutional networks (FCNs) for medical image …