The developing utility of zebrafish models of neurological and neuropsychiatric disorders: A critical review

BD Fontana, NJ Mezzomo, AV Kalueff… - Experimental …, 2018 - Elsevier
Zebrafish (Danio rerio) have become a powerful tool in neuroscience research due to their
genetic tractability, molecular/physiological conservation, small body size, ease of …

An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice

T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat - Genes, 2020 - mdpi.com
Gene duplication is an important evolutionary mechanism allowing to provide new genetic
material and thus opportunities to acquire new gene functions for an organism, with major …

The multiple fates of gene duplications: deletion, hypofunctionalization, subfunctionalization, neofunctionalization, dosage balance constraints, and neutral variation

JA Birchler, H Yang - The Plant Cell, 2022 - academic.oup.com
Gene duplications have long been recognized as a contributor to the evolution of genes with
new functions. Multiple copies of genes can result from tandem duplication, from …

Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Y Wang, H Tang, JD DeBarry, X Tan, J Li… - Nucleic acids …, 2012 - academic.oup.com
MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify
putative homologous chromosomal regions, and align these regions using genes as …

PGDD: a database of gene and genome duplication in plants

TH Lee, H Tang, X Wang, AH Paterson - Nucleic acids research, 2012 - academic.oup.com
Genome duplication (GD) has permanently shaped the architecture and function of many
higher eukaryotic genomes. The angiosperms (flowering plants) are outstanding models in …

Gene duplicability of core genes is highly consistent across all angiosperms

Z Li, J Defoort, S Tasdighian, S Maere… - The Plant …, 2016 - academic.oup.com
Gene duplication is an important mechanism for adding to genomic novelty. Hence, which
genes undergo duplication and are preserved following duplication is an important question …

[HTML][HTML] Homoeologs: what are they and how do we infer them?

NM Glover, H Redestig, C Dessimoz - Trends in plant science, 2016 - cell.com
The evolutionary history of nearly all flowering plants includes a polyploidization event.
Homologous genes resulting from allopolyploidy are commonly referred to as 'homoeologs' …

Genome and gene duplications and gene expression divergence: a view from plants

Y Wang, X Wang, AH Paterson - … of the New York Academy of …, 2012 - Wiley Online Library
With many plant genomes sequenced, it is now clear that one distinguishing feature of
angiosperm (flowering plant) genomes is their high frequency of whole‐genome duplication …

Comprehensive analysis of NAC domain transcription factor gene family in Vitis vinifera

N Wang, Y Zheng, H Xin, L Fang, S Li - Plant cell reports, 2013 - Springer
Key message Genome-wide identification of grapevine NAC domain genes and
investigation of their chromosome locations, gene structures, duplication, evolution …