Domain-specific knowledge graphs: A survey

B Abu-Salih - Journal of Network and Computer Applications, 2021 - Elsevier
Abstract Knowledge Graphs (KGs) have made a qualitative leap and effected a real
revolution in knowledge representation. This is leveraged by the underlying structure of the …

Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Systems biology, metabolic modelling and metabolomics in drug discovery and development

DB Kell - Drug discovery today, 2006 - Elsevier
Unlike signalling pathways, metabolic networks are subject to strict stoichiometric
constraints. Metabolomics amplifies changes in the proteome, and represents more closely …

Knowledge engineering in chemistry: from expert systems to agents of creation

A Kondinski, J Bai, S Mosbach, J Akroyd… - Accounts of Chemical …, 2022 - ACS Publications
Conspectus Passing knowledge from human to human is a natural process that has
continued since the beginning of humankind. Over the past few decades, we have …

OntoKin: An ontology for chemical kinetic reaction mechanisms

F Farazi, J Akroyd, S Mosbach, P Buerger… - Journal of Chemical …, 2019 - ACS Publications
An ontology for capturing both data and the semantics of chemical kinetic reaction
mechanisms has been developed. Such mechanisms can be applied to simulate and …

Knowledge graph representation of zeolitic crystalline materials

A Kondinski, P Rutkevych, L Pascazio, DN Tran… - Digital …, 2024 - pubs.rsc.org
Zeolites are complex and porous crystalline inorganic materials that serve as hosts for a
variety of molecular, ionic and cluster species. Formal, machine-actionable representation of …

The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web

J Hastings, L Chepelev, E Willighagen, N Adams… - PloS one, 2011 - journals.plos.org
Cheminformatics is the application of informatics techniques to solve chemical problems in
silico. There are many areas in biology where cheminformatics plays an important role in …

The contribution of computational studies to organometallic catalysis: descriptors, mechanisms and models

N Fey - Dalton transactions, 2010 - pubs.rsc.org
With the growing availability of cheap and fast computing resources, increasingly detailed
and sophisticated computational studies of homogeneous organometallic catalysis have …

Knowledge graph approach to combustion chemistry and interoperability

F Farazi, M Salamanca, S Mosbach, J Akroyd… - ACS …, 2020 - ACS Publications
In this paper, we demonstrate through examples how the concept of a Semantic Web based
knowledge graph can be used to integrate combustion modeling into cross-disciplinary …

From database to knowledge graph—using data in chemistry

A Menon, NB Krdzavac, M Kraft - Current Opinion in Chemical Engineering, 2019 - Elsevier
Over the last couple of decades, the scientific community has made large efforts to process
and store experimental and computational chemical data and information on the world wide …