Plant small RNAs: their biogenesis, regulatory roles, and functions

J Zhan, BC Meyers - Annual Review of Plant Biology, 2023 - annualreviews.org
Plant cells accumulate small RNA molecules that regulate plant development, genome
stability, and environmental responses. These small RNAs fall into three major classes …

The expanding world of small RNAs in plants

F Borges, RA Martienssen - Nature reviews Molecular cell biology, 2015 - nature.com
Plant genomes encode various small RNAs that function in distinct, yet overlapping, genetic
and epigenetic silencing pathways. However, the abundance and diversity of small-RNA …

Argonaute proteins: functional insights and emerging roles

G Meister - Nature Reviews Genetics, 2013 - nature.com
Small-RNA-guided gene regulation has emerged as one of the fundamental principles in
cell function, and the major protein players in this process are members of the Argonaute …

The evolutionary journey of Argonaute proteins

DC Swarts, K Makarova, Y Wang, K Nakanishi… - Nature structural & …, 2014 - nature.com
Argonaute proteins are conserved throughout all domains of life. Recently characterized
prokaryotic Argonaute proteins (pAgos) participate in host defense by DNA interference …

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs in Arabidopsis

NG Bologna, O Voinnet - Annual review of plant biology, 2014 - annualreviews.org
In eukaryotic RNA silencing, RNase-III classes of enzymes in the Dicer family process
double-stranded RNA of cellular or exogenous origin into small-RNA (sRNA) molecules …

DNA-guided DNA interference by a prokaryotic Argonaute

DC Swarts, MM Jore, ER Westra, Y Zhu, JH Janssen… - Nature, 2014 - nature.com
RNA interference is widely distributed in eukaryotes and has a variety of functions, including
antiviral defence and gene regulation,. All RNA interference pathways use small single …

From guide to target: molecular insights into eukaryotic RNA-interference machinery

JJ Ipsaro, L Joshua-Tor - Nature structural & molecular biology, 2015 - nature.com
Since its relatively recent discovery, RNA interference (RNAi) has emerged as a potent,
specific and ubiquitous means of gene regulation. Through a number of pathways that are …

Argonaute of the archaeon Pyrococcus furiosus is a DNA-guided nuclease that targets cognate DNA

DC Swarts, JW Hegge, I Hinojo, M Shiimori… - Nucleic acids …, 2015 - academic.oup.com
Functions of prokaryotic Argonautes (pAgo) have long remained elusive. Recently,
Argonautes of the bacteria Rhodobacter sphaeroides and Thermus thermophilus were …

siRNA specificity: RNAi mechanisms and strategies to reduce off-target effects

J Neumeier, G Meister - Frontiers in Plant Science, 2021 - frontiersin.org
Short interfering RNAs (siRNAs) are processed from long double-stranded RNA (dsRNA),
and a guide strand is selected and incorporated into the RNA-induced silencing complex …

RNAi in plants: an argonaute-centered view

X Fang, Y Qi - The Plant Cell, 2016 - academic.oup.com
Argonaute (AGO) family proteins are effectors of RNAi in eukaryotes. AGOs bind small RNAs
and use them as guides to silence target genes or transposable elements at the …