The RNA polymerase II carboxy-terminal domain (CTD) code
D Eick, M Geyer - Chemical reviews, 2013 - ACS Publications
The smallest viable unit of life is the cell. From bacteria to mammals, all cells use the same
nucleic acid-based universal code for the maintenance and inheritance of genetic …
nucleic acid-based universal code for the maintenance and inheritance of genetic …
Dynamic integration of splicing within gene regulatory pathways
U Braunschweig, S Gueroussov, AM Plocik… - Cell, 2013 - cell.com
Precursor mRNA splicing is one of the most highly regulated processes in metazoan
species. In addition to generating vast repertoires of RNAs and proteins, splicing has a …
species. In addition to generating vast repertoires of RNAs and proteins, splicing has a …
The DBHS proteins SFPQ, NONO and PSPC1: a multipurpose molecular scaffold
Nuclear proteins are often given a concise title that captures their function, such as
'transcription factor,''polymerase'or 'nuclear-receptor.'However, for members of the …
'transcription factor,''polymerase'or 'nuclear-receptor.'However, for members of the …
The RNA polymerase II CTD coordinates transcription and RNA processing
The C-terminal domain (CTD) of the RNA polymerase II largest subunit consists of multiple
heptad repeats (consensus Tyr1–Ser2–Pro3–Thr4–Ser5–Pro6–Ser7), varying in number …
heptad repeats (consensus Tyr1–Ser2–Pro3–Thr4–Ser5–Pro6–Ser7), varying in number …
DHX9 helicase promotes R-loop formation in cells with impaired RNA splicing
P Chakraborty, JTJ Huang, K Hiom - Nature communications, 2018 - nature.com
R-loops are stable nucleic acid structures that have important physiological functions, but
which also pose a significant threat to genomic stability. Increased R-loops cause replication …
which also pose a significant threat to genomic stability. Increased R-loops cause replication …
Molecular mechanisms of eukaryotic pre-mRNA 3′ end processing regulation
S Millevoi, S Vagner - Nucleic acids research, 2010 - academic.oup.com
ABSTRACT Messenger RNA (mRNA) 3′ end formation is a nuclear process through which
all eukaryotic primary transcripts are endonucleolytically cleaved and most of them acquire a …
all eukaryotic primary transcripts are endonucleolytically cleaved and most of them acquire a …
Transcription termination by nuclear RNA polymerases
P Richard, JL Manley - Genes & development, 2009 - genesdev.cshlp.org
Gene transcription in the cell nucleus is a complex and highly regulated process.
Transcription in eukaryotes requires three distinct RNA polymerases, each of which employs …
Transcription in eukaryotes requires three distinct RNA polymerases, each of which employs …
The RNA-binding protein SFPQ preserves long-intron splicing and regulates circRNA biogenesis in mammals
LVW Stagsted, ET O'Leary, KK Ebbesen, TB Hansen - Elife, 2021 - elifesciences.org
Circular RNAs (circRNAs) represent an abundant and conserved entity of non-coding RNAs;
however, the principles of biogenesis are currently not fully understood. Here, we identify …
however, the principles of biogenesis are currently not fully understood. Here, we identify …
Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation
JY Ip, D Schmidt, Q Pan, AK Ramani… - Genome …, 2011 - genome.cshlp.org
The rate of RNA polymerase II (Pol II) elongation can influence splice site selection in
nascent transcripts, yet the extent and physiological relevance of this kinetic coupling …
nascent transcripts, yet the extent and physiological relevance of this kinetic coupling …
Genome organization around nuclear speckles drives mRNA splicing efficiency
The nucleus is highly organized, such that factors involved in the transcription and
processing of distinct classes of RNA are confined within specific nuclear bodies,. One …
processing of distinct classes of RNA are confined within specific nuclear bodies,. One …