The RNA polymerase II carboxy-terminal domain (CTD) code

D Eick, M Geyer - Chemical reviews, 2013 - ACS Publications
The smallest viable unit of life is the cell. From bacteria to mammals, all cells use the same
nucleic acid-based universal code for the maintenance and inheritance of genetic …

Dynamic integration of splicing within gene regulatory pathways

U Braunschweig, S Gueroussov, AM Plocik… - Cell, 2013 - cell.com
Precursor mRNA splicing is one of the most highly regulated processes in metazoan
species. In addition to generating vast repertoires of RNAs and proteins, splicing has a …

The DBHS proteins SFPQ, NONO and PSPC1: a multipurpose molecular scaffold

GJ Knott, CS Bond, AH Fox - Nucleic acids research, 2016 - academic.oup.com
Nuclear proteins are often given a concise title that captures their function, such as
'transcription factor,''polymerase'or 'nuclear-receptor.'However, for members of the …

The RNA polymerase II CTD coordinates transcription and RNA processing

JP Hsin, JL Manley - Genes & development, 2012 - genesdev.cshlp.org
The C-terminal domain (CTD) of the RNA polymerase II largest subunit consists of multiple
heptad repeats (consensus Tyr1–Ser2–Pro3–Thr4–Ser5–Pro6–Ser7), varying in number …

DHX9 helicase promotes R-loop formation in cells with impaired RNA splicing

P Chakraborty, JTJ Huang, K Hiom - Nature communications, 2018 - nature.com
R-loops are stable nucleic acid structures that have important physiological functions, but
which also pose a significant threat to genomic stability. Increased R-loops cause replication …

Molecular mechanisms of eukaryotic pre-mRNA 3′ end processing regulation

S Millevoi, S Vagner - Nucleic acids research, 2010 - academic.oup.com
ABSTRACT Messenger RNA (mRNA) 3′ end formation is a nuclear process through which
all eukaryotic primary transcripts are endonucleolytically cleaved and most of them acquire a …

Transcription termination by nuclear RNA polymerases

P Richard, JL Manley - Genes & development, 2009 - genesdev.cshlp.org
Gene transcription in the cell nucleus is a complex and highly regulated process.
Transcription in eukaryotes requires three distinct RNA polymerases, each of which employs …

The RNA-binding protein SFPQ preserves long-intron splicing and regulates circRNA biogenesis in mammals

LVW Stagsted, ET O'Leary, KK Ebbesen, TB Hansen - Elife, 2021 - elifesciences.org
Circular RNAs (circRNAs) represent an abundant and conserved entity of non-coding RNAs;
however, the principles of biogenesis are currently not fully understood. Here, we identify …

Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation

JY Ip, D Schmidt, Q Pan, AK Ramani… - Genome …, 2011 - genome.cshlp.org
The rate of RNA polymerase II (Pol II) elongation can influence splice site selection in
nascent transcripts, yet the extent and physiological relevance of this kinetic coupling …

Genome organization around nuclear speckles drives mRNA splicing efficiency

P Bhat, A Chow, B Emert, O Ettlin, SA Quinodoz… - Nature, 2024 - nature.com
The nucleus is highly organized, such that factors involved in the transcription and
processing of distinct classes of RNA are confined within specific nuclear bodies,. One …