[HTML][HTML] Exploring and exploiting genetics and genomics for sweetpotato improvement: Status and perspectives

M Yan, H Nie, Y Wang, X Wang, R Jarret, J Zhao… - Plant …, 2022 - cell.com
Abstract Sweetpotato (Ipomoea batatas (L.) Lam.) is one of the most important root crops
cultivated worldwide. Because of its adaptability, high yield potential, and nutritional value …

[HTML][HTML] Tools for genetic studies in experimental populations of polyploids

PM Bourke, RE Voorrips, RGF Visser… - Frontiers in plant …, 2018 - frontiersin.org
Polyploid organisms carry more than two copies of each chromosome, a condition rarely
tolerated in animals but which occurs relatively frequently in the plant kingdom. One of the …

[HTML][HTML] Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer

G Covarrubias-Pazaran - PloS one, 2016 - journals.plos.org
Most traits of agronomic importance are quantitative in nature, and genetic markers have
been used for decades to dissect such traits. Recently, genomic selection has earned …

[HTML][HTML] Polyploidy before and after domestication of crop species

T Akagi, K Jung, K Masuda, KK Shimizu - Current Opinion in Plant Biology, 2022 - Elsevier
Recent advances in the genomics of polyploid species answer some of the long-standing
questions about the role of polyploidy in crop species. Here, we summarize the current …

Genetic and genomic resources for Rubus breeding: a roadmap for the future

TM Foster, NV Bassil, M Dossett… - Horticulture …, 2019 - academic.oup.com
Rubus fruits are high-value crops that are sought after by consumers for their flavor, visual
appeal, and health benefits. To meet this demand, production of red and black raspberries …

AGHmatrix: genetic relationship matrices in R

RR Amadeu, AAF Garcia, PR Munoz… - Bioinformatics, 2023 - academic.oup.com
Motivation The resemble between relatives computed from pedigree and genomic data is an
important resource for geneticists and ecologists, who are interested in understanding how …

Solyntus, the New Highly Contiguous Reference Genome for Potato (Solanum tuberosum)

N van Lieshout, A van der Burgt… - G3: Genes …, 2020 - academic.oup.com
With the rapid expansion of the application of genomics and sequencing in plant breeding,
there is a constant drive for better reference genomes. In potato (Solanum tuberosum), the …

[HTML][HTML] Recommendations for choosing the genotyping method and best practices for quality control in crop genome-wide association studies

S Pavan, C Delvento, L Ricciardi, C Lotti, E Ciani… - Frontiers in …, 2020 - frontiersin.org
High-throughput genotyping boosts genome-wide association studies (GWAS) in crop
species, leading to the identification of single-nucleotide polymorphisms (SNPs) associated …

[HTML][HTML] Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing

E Sverrisdóttir, S Byrne, EHR Sundmark… - Theoretical and Applied …, 2017 - Springer
Key message Genomic prediction models for starch content and chipping quality show
promising results, suggesting that genomic selection is a feasible breeding strategy in …

[HTML][HTML] Germplasm, breeding, and genomics in potato improvement of biotic and abiotic stresses tolerance

JK Tiwari, T Buckseth, R Zinta, N Bhatia… - Frontiers in Plant …, 2022 - frontiersin.org
Potato is one of the most important food crops in the world. Late blight, viruses, soil and
tuber-borne diseases, insect-pests mainly aphids, whiteflies, and potato tuber moths are the …