Computational systems biology
H Kitano - Nature, 2002 - nature.com
To understand complex biological systems requires the integration of experimental and
computational research—in other words a systems biology approach. Computational …
computational research—in other words a systems biology approach. Computational …
Evolution of central pattern generators and rhythmic behaviours
PS Katz - … Transactions of the Royal Society B: Biological …, 2016 - royalsocietypublishing.org
Comparisons of rhythmic movements and the central pattern generators (CPGs) that control
them uncover principles about the evolution of behaviour and neural circuits. Over the …
them uncover principles about the evolution of behaviour and neural circuits. Over the …
Capturing the continuous complexity of behaviour in Caenorhabditis elegans
Animal behaviour is often quantified through subjective, incomplete variables that mask
essential dynamics. Here, we develop a maximally predictive behavioural-state space from …
essential dynamics. Here, we develop a maximally predictive behavioural-state space from …
C. elegans locomotion: small circuits, complex functions
M Zhen, ADT Samuel - Current opinion in neurobiology, 2015 - Elsevier
Highlights•The Caenorhabditis elegans motor circuit has a nearly complete connectome.•
Neurogenetic studies are unveiling a rich and complex set of signaling relationships …
Neurogenetic studies are unveiling a rich and complex set of signaling relationships …
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans
The adoption of powerful software tools and computational methods from the software
industry by the scientific research community has resulted in a renewed interest in …
industry by the scientific research community has resulted in a renewed interest in …
Polyethylene nanoparticles at environmentally relevant concentrations enhances neurotoxicity and accumulation of 6-PPD quinone in Caenorhabditis elegans
X Hua, D Wang - Science of The Total Environment, 2024 - Elsevier
The exposure risk of 6-PPD quinone (6-PPDQ) has aroused increasing concern. In the
natural environment, 6-PPDQ could interact with other pollutants, posing more severe …
natural environment, 6-PPDQ could interact with other pollutants, posing more severe …
Robust circuit rhythms in small circuits arise from variable circuit components and mechanisms
Highlights•Analysis of small oscillatory circuits reveals variability in system
parameters.•Circuits with different parameter sets can be robust to moderate …
parameters.•Circuits with different parameter sets can be robust to moderate …
Colloquium: Multiscale modeling of brain network organization
C Presigny, F De Vico Fallani - Reviews of Modern Physics, 2022 - APS
A complete understanding of the brain requires an integrated description of the numerous
scales and levels of neural organization. This means studying the interplay of genes and …
scales and levels of neural organization. This means studying the interplay of genes and …
OpenWorm: an open-science approach to modeling Caenorhabditis elegans
OpenWorm is an international collaboration with the aim of understanding how the behavior
of Caenorhabditis elegans (C. elegans) emerges from its underlying physiological …
of Caenorhabditis elegans (C. elegans) emerges from its underlying physiological …
Excitatory motor neurons are local oscillators for backward locomotion
Cell-or network-driven oscillators underlie motor rhythmicity. The identity of C. elegans
oscillators remains unknown. Through cell ablation, electrophysiology, and calcium imaging …
oscillators remains unknown. Through cell ablation, electrophysiology, and calcium imaging …