Structural determinants and mechanism of HIV-1 genome packaging

K Lu, X Heng, MF Summers - Journal of molecular biology, 2011 - Elsevier
Like all retroviruses, the human immunodeficiency virus selectively packages two copies of
its unspliced RNA genome, both of which are utilized for strand-transfer-mediated …

The tale of the long tail: the cytoplasmic domain of HIV-1 gp41

TS Postler, RC Desrosiers - Journal of virology, 2013 - Am Soc Microbiol
Envelope glycoproteins (Env) of lentiviruses typically possess unusually long cytoplasmic
domains, often 150 amino acids or longer. It is becoming increasingly clear that these …

New real-time reverse transcriptase-initiated PCR assay with single-copy sensitivity for human immunodeficiency virus type 1 RNA in plasma

S Palmer, AP Wiegand, F Maldarelli… - Journal of clinical …, 2003 - Am Soc Microbiol
More sensitive assays for human immunodeficiency virus type 1 (HIV-1) RNA are needed to
detect, quantify, and characterize persistent viremia in patients who are receiving …

A coalescent-based method for detecting and estimating recombination from gene sequences

G McVean, P Awadalla, P Fearnhead - Genetics, 2002 - academic.oup.com
Determining the amount of recombination in the genealogical history of a sample of genes is
important to both evolutionary biology and medical population genetics. However, recurrent …

Crystal structure of HIV-1 Tat complexed with human P-TEFb

TH Tahirov, ND Babayeva, K Varzavand, JJ Cooper… - Nature, 2010 - nature.com
Regulation of the expression of the human immunodeficiency virus (HIV) genome is
accomplished in large part by controlling transcription elongation. The viral protein Tat …

Resting CD4+ T Cells from Human Immunodeficiency Virus Type 1 (HIV-1)-Infected Individuals Carry Integrated HIV-1 Genomes within Actively Transcribed Host …

Y Han, K Lassen, D Monie, AR Sedaghat… - Journal of …, 2004 - Am Soc Microbiol
Resting CD4+ T-cell populations from human immunodeficiency virus type 1 (HIV-1)-
infected individuals include cells with integrated HIV-1 DNA. In individuals showing …

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates

S Duchêne, EC Holmes… - Proceedings of the …, 2014 - royalsocietypublishing.org
Time-scales of viral evolution and emergence have been studied widely, but are often poorly
understood. Molecular analyses of viral evolutionary time-scales generally rely on estimates …

Topological layers in the HIV-1 gp120 inner domain regulate gp41 interaction and CD4-triggered conformational transitions

A Finzi, SH Xiang, B Pacheco, L Wang, J Haight… - Molecular cell, 2010 - cell.com
The entry of human immunodeficiency virus (HIV-1) into cells is initiated by binding of the
gp120 exterior envelope glycoprotein to the receptor, CD4. How does CD4 binding trigger …

Antiviral inhibition of the HIV-1 capsid protein

C Tang, E Loeliger, I Kinde, S Kyere, K Mayo… - Journal of molecular …, 2003 - Elsevier
During the assembly stage of the human immunodeficiency virus (HIV) replication cycle,
several thousand copies of the viral Gag polyprotein associate at the cell membrane and …

Recombination rate and selection strength in HIV intra-patient evolution

RA Neher, T Leitner - PLoS computational biology, 2010 - journals.plos.org
The evolutionary dynamics of HIV during the chronic phase of infection is driven by the host
immune response and by selective pressures exerted through drug treatment. To …