NCBI Taxonomy: a comprehensive update on curation, resources and tools
Abstract The National Center for Biotechnology Information (NCBI) Taxonomy includes
organism names and classifications for every sequence in the nucleotide and protein …
organism names and classifications for every sequence in the nucleotide and protein …
[HTML][HTML] Modulation of the root microbiome by plant molecules: the basis for targeted disease suppression and plant growth promotion
Plants host a mesmerizing diversity of microbes inside and around their roots, known as the
microbiome. The microbiome is composed mostly of fungi, bacteria, oomycetes, and …
microbiome. The microbiome is composed mostly of fungi, bacteria, oomycetes, and …
[HTML][HTML] RESCRIPt: Reproducible sequence taxonomy reference database management
Nucleotide sequence and taxonomy reference databases are critical resources for
widespread applications including marker-gene and metagenome sequencing for …
widespread applications including marker-gene and metagenome sequencing for …
[HTML][HTML] Fusarium: more than a node or a foot-shaped basal cell
Recent publications have argued that there are potentially serious consequences for
researchers in recognising distinct genera in the terminal fusarioid clade of the family …
researchers in recognising distinct genera in the terminal fusarioid clade of the family …
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
RH Nilsson, KH Larsson, AFS Taylor… - Nucleic acids …, 2019 - academic.oup.com
Abstract UNITE (https://unite. ut. ee/) is a web-based database and sequence management
environment for the molecular identification of fungi. It targets the formal fungal barcode—the …
environment for the molecular identification of fungi. It targets the formal fungal barcode—the …
[HTML][HTML] Fungal taxonomy and sequence-based nomenclature
The identification and proper naming of microfungi, in particular plant, animal and human
pathogens, remains challenging. Molecular identification is becoming the default approach …
pathogens, remains challenging. Molecular identification is becoming the default approach …
The human oral microbiome in health and disease: from sequences to ecosystems
JR Willis, T Gabaldón - Microorganisms, 2020 - mdpi.com
The human oral cavity is home to an abundant and diverse microbial community (ie, the oral
microbiome), whose composition and roles in health and disease have been the focus of …
microbiome), whose composition and roles in health and disease have been the focus of …
[HTML][HTML] Mycobiome diversity: high-throughput sequencing and identification of fungi
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
[HTML][HTML] In honor of John Bissett: authoritative guidelines on molecular identification of Trichoderma
F Cai, IS Druzhinina - Fungal Diversity, 2021 - Springer
Modern taxonomy has developed towards the establishment of global authoritative lists of
species that assume the standardized principles of species recognition, at least in a given …
species that assume the standardized principles of species recognition, at least in a given …
[HTML][HTML] The human skin microbiome
Functioning as the exterior interface of the human body with the environment, skin acts as a
physical barrier to prevent the invasion of foreign pathogens while providing a home to the …
physical barrier to prevent the invasion of foreign pathogens while providing a home to the …