PubMed and beyond: a survey of web tools for searching biomedical literature

Z Lu - Database, 2011 - academic.oup.com
The past decade has witnessed the modern advances of high-throughput technology and
rapid growth of research capacity in producing large-scale biological data, both of which …

Text-mining solutions for biomedical research: enabling integrative biology

D Rebholz-Schuhmann, A Oellrich… - Nature Reviews …, 2012 - nature.com
In response to the unbridled growth of information in literature and biomedical databases,
researchers require efficient means of handling and extracting information. As well as …

A modular framework for biomedical concept recognition

D Campos, S Matos, JL Oliveira - BMC bioinformatics, 2013 - Springer
Background Concept recognition is an essential task in biomedical information extraction,
presenting several complex and unsolved challenges. The development of such solutions is …

Analysis of biological processes and diseases using text mining approaches

M Krallinger, F Leitner, A Valencia - Bioinformatics Methods in Clinical …, 2010 - Springer
A number of biomedical text mining systems have been developed to extract biologically
relevant information directly from the literature, complementing bioinformatics methods in the …

Accessing biomedical literature in the current information landscape

R Khare, R Leaman, Z Lu - Biomedical literature mining, 2014 - Springer
Biomedical and life sciences literature is unique because of its exponentially increasing
volume and interdisciplinary nature. Biomedical literature access is essential for several …

[PDF][PDF] Life-inet: A structured network-based knowledge exploration and analytics system for life sciences

X Ren, J Shen, M Qu, X Wang, Z Wu… - Proceedings of ACL …, 2017 - aclanthology.org
Search engines running on scientific literature have been widely used by life scientists to
find publications related to their research. However, existing search engines in the life …

[PDF][PDF] Deeplife: An entity-aware search, analytics and exploration platform for health and life sciences

P Ernst, A Siu, D Milchevski, J Hoffart… - The 54th Annual Meeting …, 2016 - pure.mpg.de
Despite the abundance of biomedical literature and health discussions in online
communities, it is often tedious to retrieve informative contents for health-centric information …

Biological information extraction and co-occurrence analysis

GA Pavlopoulos, VJ Promponas, CA Ouzounis… - Biomedical literature …, 2014 - Springer
Nowadays, it is possible to identify terms corresponding to biological entities within
passages in biomedical text corpora: critically, their potential relationships then need to be …

Mining biomedical images towards valuable information retrieval in biomedical and life sciences

Z Ahmed, S Zeeshan, T Dandekar - Database, 2016 - academic.oup.com
Biomedical images are helpful sources for the scientists and practitioners in drawing
significant hypotheses, exemplifying approaches and describing experimental results in …

Learning parse structure of paragraphs and its applications in search

B Galitsky - Engineering Applications of Artificial Intelligence, 2014 - Elsevier
We propose to combine parse forest and discourse structures to form a unified
representation for a paragraph of text. The purpose of this representation is to tackle …