Applications of multi-omics technologies for crop improvement

Y Yang, MA Saand, L Huang, WB Abdelaal… - Frontiers in Plant …, 2021 - frontiersin.org
Multiple “omics” approaches have emerged as successful technologies for plant systems
over the last few decades. Advances in next-generation sequencing (NGS) have paved a …

Genomic resources in plant breeding for sustainable agriculture

M Thudi, R Palakurthi, JC Schnable… - Journal of Plant …, 2021 - Elsevier
Climate change during the last 40 years has had a serious impact on agriculture and
threatens global food and nutritional security. From over half a million plant species, cereals …

Extensive variation within the pan-genome of cultivated and wild sorghum

Y Tao, H Luo, J Xu, A Cruickshank, X Zhao, F Teng… - Nature Plants, 2021 - nature.com
Sorghum is a drought-tolerant staple crop for half a billion people in Africa and Asia, an
important source of animal feed throughout the world and a biofuel feedstock of growing …

Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement

AW Schulthess, SM Kale, F Liu, Y Zhao, N Philipp… - Nature Genetics, 2022 - nature.com
The great efforts spent in the maintenance of past diversity in genebanks are rationalized by
the potential role of plant genetic resources (PGR) in future crop improvement—a concept …

Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield

Z Ma, S He, X Wang, J Sun, Y Zhang, G Zhang, L Wu… - Nature …, 2018 - nature.com
Upland cotton is the most important natural-fiber crop. The genomic variation of diverse
germplasms and alleles underpinning fiber quality and yield should be extensively explored …

The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization

RF McCormick, SK Truong, A Sreedasyam… - The Plant …, 2018 - Wiley Online Library
Sorghum bicolor is a drought tolerant C4 grass used for the production of grain, forage,
sugar, and lignocellulosic biomass and a genetic model for C4 grasses due to its relatively …

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

K Yano, E Yamamoto, K Aya, H Takeuchi, P Lo, L Hu… - Nature …, 2016 - nature.com
A genome-wide association study (GWAS) can be a powerful tool for the identification of
genes associated with agronomic traits in crop species, but it is often hindered by population …

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

RK Varshney, M Thudi, M Roorkiwal, W He… - Nature …, 2019 - nature.com
We report a map of 4.97 million single-nucleotide polymorphisms of the chickpea from whole-
genome resequencing of 429 lines sampled from 45 countries. We identified 122 candidate …

A survey of the sorghum transcriptome using single-molecule long reads

SE Abdel-Ghany, M Hamilton, JL Jacobi… - Nature …, 2016 - nature.com
Alternative splicing and alternative polyadenylation (APA) of pre-mRNAs greatly contribute
to transcriptome diversity, coding capacity of a genome and gene regulatory mechanisms in …

Wild sorghum as a promising resource for crop improvement

GKS Ananda, H Myrans, SL Norton… - Frontiers in Plant …, 2020 - frontiersin.org
Sorghum bicolor (L.) Moench is a multipurpose food crop which is ranked among the top five
cereal crops in the world, and is used as a source of food, fodder, feed, and fuel. The genus …