The emerging landscape of single-molecule protein sequencing technologies

JA Alfaro, P Bohländer, M Dai, M Filius, CJ Howard… - Nature …, 2021 - nature.com
Single-cell profiling methods have had a profound impact on the understanding of cellular
heterogeneity. While genomes and transcriptomes can be explored at the single-cell level …

Protein sequencing, one molecule at a time

BM Floyd, EM Marcotte - Annual review of biophysics, 2022 - annualreviews.org
Despite tremendous gains over the past decade, methods for characterizing proteins have
generally lagged behind those for nucleic acids, which are characterized by extremely high …

Strategies for development of a next-generation protein sequencing platform

N Callahan, J Tullman, Z Kelman, J Marino - Trends in biochemical …, 2020 - cell.com
Proteomic analysis can be a critical bottleneck in cellular characterization. The current
paradigm relies primarily on mass spectrometry of peptides and affinity reagents (ie …

Single-molecule fluorescence methods for protein biomarker analysis

H He, C Wu, M Saqib, R Hao - Analytical and Bioanalytical Chemistry, 2023 - Springer
Proteins have been considered key building blocks of life. In particular, the protein content of
an organism and a cell offers significant information for the in-depth understanding of the …

Full-length single-molecule protein fingerprinting

M Filius, R van Wee, C de Lannoy… - Nature …, 2024 - nature.com
Proteins are the primary functional actors of the cell. While proteoform diversity is known to
be highly biologically relevant, current protein analysis methods are of limited use for …

Unraveling the impact of nano-scaling on silicon field-effect transistors for the detection of single-molecules

S Santermans, G Hellings, M Heyns, W Van Roy… - Nanoscale, 2023 - pubs.rsc.org
Electrolyte-gated silicon field-effect transistors (FETs) capable of detecting single molecules
could enable high-throughput molecular sensing chips to advance, for example, genomics …

Theoretical considerations for next-generation proteomics

M Palmblad - Journal of Proteome Research, 2021 - ACS Publications
While mass spectrometry still dominates proteomics research, alternative and potentially
disruptive, next-generation technologies are receiving increased investment and attention …

Selective C-Terminal Conjugation of Protease-Derived Native Peptides for Proteomic Measurements

T Xie, A Brady, C Velarde, DN Vaccarello… - Langmuir, 2022 - ACS Publications
Bottom-up proteomic experiments often require selective conjugation or labeling of the N-
and/or C-termini of peptides resulting from proteolytic digestion. For example, techniques …

A binary/digital approach to amino acid identification and its application to peptide sequencing and protein identification

G Sampath - The European Physical Journal E, 2022 - Springer
A binary/digital method is proposed in theory for the identification of single amino acids
(AAs) in the bulk or with a few molecules from a single binary measurement. Combined with …

Computational assessment of the feasibility of protonation-based protein sequencing

G Miclotte, K Martens, J Fostier - PLoS One, 2020 - journals.plos.org
Recent advances in DNA sequencing methods revolutionized biology by providing highly
accurate reads, with high throughput or high read length. These read data are being used in …