Emerging roles of ATG proteins and membrane lipids in autophagosome formation

T Nishimura, SA Tooze - Cell discovery, 2020 - nature.com
Autophagosome biogenesis is a dynamic membrane event, which is executed by the
sequential function of autophagy-related (ATG) proteins. Upon autophagy induction, a cup …

Organization of the ER–Golgi interface for membrane traffic control

F Brandizzi, C Barlowe - Nature reviews Molecular cell biology, 2013 - nature.com
Coat protein complex I (COPI) and COPII are required for bidirectional membrane trafficking
between the endoplasmic reticulum (ER) and the Golgi. While these core coat machineries …

A genome-wide resource for the analysis of protein localisation in Drosophila

M Sarov, C Barz, H Jambor, MY Hein, C Schmied… - elife, 2016 - elifesciences.org
The Drosophila genome contains> 13000 protein-coding genes, the majority of which
remain poorly investigated. Important reasons include the lack of antibodies or reporter …

Synchronization of secretory protein traffic in populations of cells

G Boncompain, S Divoux, N Gareil, H De Forges… - Nature …, 2012 - nature.com
To dissect secretory traffic, we developed the retention using selective hooks (RUSH)
system. RUSH is a two-state assay based on the reversible interaction of a hook protein …

The novel tail-anchored membrane protein Mff controls mitochondrial and peroxisomal fission in mammalian cells

S Gandre-Babbe, AM van der Bliek - Molecular biology of the cell, 2008 - Am Soc Cell Biol
Few components of the mitochondrial fission machinery are known, even though
mitochondrial fission is a complex process of vital importance for cell growth and survival …

Statistical methods for analysis of high-throughput RNA interference screens

A Birmingham, LM Selfors, T Forster, D Wrobel… - Nature …, 2009 - nature.com
RNA interference (RNAi) has become a powerful technique for reverse genetics and drug
discovery, and in both of these areas large-scale high-throughput RNAi screens are …

Smartphone fluorescence spectroscopy

H Yu, Y Tan, BT Cunningham - Analytical chemistry, 2014 - ACS Publications
We demonstrate the first use of smartphone spectrophotometry for readout of fluorescence-
based biological assays. We evaluated the smartphone fluorimeter in the context of a …

Genome-wide RNAi screen of Ca2+ influx identifies genes that regulate Ca2+ release-activated Ca2+ channel activity

SL Zhang, AV Yeromin, XHF Zhang… - Proceedings of the …, 2006 - National Acad Sciences
Recent studies by our group and others demonstrated a required and conserved role of Stim
in store-operated Ca2+ influx and Ca2+ release-activated Ca2+ (CRAC) channel activity. By …

Functional genomic screen reveals genes involved in lipid-droplet formation and utilization

Y Guo, TC Walther, M Rao, N Stuurman, G Goshima… - Nature, 2008 - nature.com
Eukaryotic cells store neutral lipids in cytoplasmic lipid droplets, enclosed in a monolayer of
phospholipids and associated proteins,. These dynamic organelles serve as the principal …

Arf1/COPI machinery acts directly on lipid droplets and enables their connection to the ER for protein targeting

F Wilfling, AR Thiam, MJ Olarte, J Wang, R Beck… - elife, 2014 - elifesciences.org
Lipid droplets (LDs) are ubiquitous organelles that store neutral lipids, such as
triacylglycerol (TG), as reservoirs of metabolic energy and membrane precursors. The …