Applied animal genomics: results from the field

AL Van Eenennaam, KA Weigel… - Annu. Rev. Anim …, 2014 - annualreviews.org
Genomic selection (GS) is the use of statistical methods to estimate the genetic merit of a
genotyped animal based on prediction equations derived from large ancestral populations …

[HTML][HTML] Genomic selection in domestic animals: principles, applications and perspectives

D Boichard, V Ducrocq, P Croiseau, S Fritz - Comptes rendus biologies, 2016 - Elsevier
The principles of genomic selection are described, with the main factors affecting its
efficiency and the assumptions underlying the different models proposed. The reasons of its …

Design and characterization of a 52K SNP chip for goats

G Tosser-Klopp, P Bardou, O Bouchez, C Cabau… - PloS one, 2014 - journals.plos.org
The success of Genome Wide Association Studies in the discovery of sequence variation
linked to complex traits in humans has increased interest in high throughput SNP …

Genotyping-by-sequencing (GBS): a novel, efficient and cost-effective genotyping method for cattle using next-generation sequencing

M De Donato, SO Peters, SE Mitchell, T Hussain… - PloS one, 2013 - journals.plos.org
High-throughput genotyping methods have increased the analytical power to study complex
traits but high cost has remained a barrier for large scale use in animal improvement. We …

Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency …

F Zhang, Y Wang, R Mukiibi, L Chen, M Vinsky… - BMC genomics, 2020 - Springer
Background Genome wide association studies (GWAS) on residual feed intake (RFI) and its
component traits including daily dry matter intake (DMI), average daily gain (ADG), and …

[HTML][HTML] Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction

RF Brøndum, G Su, L Janss, G Sahana… - Journal of dairy …, 2015 - Elsevier
This study investigated the effect on the reliability of genomic prediction when a small
number of significant variants from single marker analysis based on whole genome …

[HTML][HTML] Genomic imputation and evaluation using high-density Holstein genotypes

PM VanRaden, DJ Null, M Sargolzaei… - Journal of dairy …, 2013 - Elsevier
Genomic evaluations for 161,341 Holsteins were computed by using 311,725 of 777,962
markers on the Illumina BovineHD Genotyping BeadChip (HD). Initial edits with 1,741 HD …

How array design creates SNP ascertainment bias

J Geibel, C Reimer, S Weigend, A Weigend, T Pook… - PloS one, 2021 - journals.plos.org
Single nucleotide polymorphisms (SNPs), genotyped with arrays, have become a widely
used marker type in population genetic analyses over the last 10 years. However, compared …

Genomic analysis, progress and future perspectives in dairy cattle selection: a review

MA Gutierrez-Reinoso, PM Aponte, M Garcia-Herreros - Animals, 2021 - mdpi.com
Simple Summary The discovery of the genome has been one of the greatest advances in the
development of tools for the genetic improvement of cattle in the last decades. The use of …

Genome-Wide Association Study and Cost-Efficient Genomic Predictions for Growth and Fillet Yield in Nile Tilapia (Oreochromis niloticus)

GM Yoshida, JP Lhorente, K Correa… - G3: Genes …, 2019 - academic.oup.com
Fillet yield (FY) and harvest weight (HW) are economically important traits in Nile tilapia
production. Genetic improvement of these traits, especially for FY, are lacking, due to the …